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Vocabulaires Ouverts(www.inrae.fr)
Vocabulaires Ouverts logo
Jan 18, 2018Surveys & Texts Dataverse
Vocabulaires Ouverts @ INRAE (anciennement LovInra) accueille les ressources sémantiques produites à l'Inra : ontologies, thésaurus, terminologies, glossaires... Le pôle Numérique pour la Science de la DipSO vous encourage à publier vos ressources sémantiques selon les principes...
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period", https://doi.org/10.15454/5BLYMJ, Portail Data INRAE, V1, UNF:6:zHbwy2kRNYfSFnRYG1y0sw== [fileUNF]
Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and surrounding weeds/wild plants in horticultural contexts in southwestern France. A total of 165 libraries were p...
Jul 12, 2019
Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1
This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...
Jul 25, 2019
Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools", https://doi.org/10.15454/X23KJF, Portail Data INRAE, V1
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from composite samples of wild herbaceous plants in different ecological contexts. In total, 32 libraries were...
URGI Plant and Fungi Dataverse(www.urgi.versailles.inra.fr)
URGI Plant and Fungi Dataverse logo
Jan 18, 2018Omics Dataverse
Apr 6, 2021
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V1, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
Jan 5, 2021
Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script", https://doi.org/10.15454/A3QKZI, Portail Data INRAE, V1
See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...
Dec 4, 2020
Boutet, Stephanie; Barreda, Léa; Perreau, François; Mouille, Grégory; Lepiniec, Loïc; Corso, Massimiliano, 2020, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years", https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1
Samples collection: Six different cultivars of camelina were grown at the experimental farm of Bologna University (Italy) located in Cadriano (Bologna, Italy, 44°30′N, 11°23′E, 32 m a.s.l.) during five consecutive years (2015 - 2019). The six tested cultivars were: MIDAS (AAFC, S...
UMR IGEPP(https://www.rennes.inrae.fr/igepp)
UMR IGEPP logo
May 29, 2019
This dataverse shares datas produced by UMR Igepp / INRAE - Institut Agro - University Rennes. Ce dataverse publie les données produites par l'UMR Igepp / INRAE - Institut Agro- Université Rennes
Mar 4, 2020
Auer, Lucas, 2020, "TWS enrichment sequencing data archive", https://doi.org/10.15454/XTIHB5, Portail Data INRAE, V1
Raw sequencing data associated with a paper. Enrichment of a termite-originated bacterial community in bioreactor under anareobic conditions, with wheat straw as sole carbon source. Data produced with an Illumina MiSeq Samples names : (a and b stand for biological replicates) - G...
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