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11 to 20 of 27 Results
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array",, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"",, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, The bioinformatic script was applied to r...
Dec 1, 2020 - Select SNP for Imputation
Herault, Frederic, 2020, "Select SNP for Imputation software",, Portail Data INRAE, V1
Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a...
Nov 27, 2020
Andrey, Philippe; Arpòn, Javier, 2020, "Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin: main source code.",, Portail Data INRAE, V2
This dataset contains the source code of a program for the statistical spatial analysis of objects patterns from 3D images. An executable version of the program, compiled for Ubuntu 18.04, is also included. The program has been applied to analyze the 3D spatial arrangement of chr...
Oct 12, 2020
Barroso Bergada, Didac, 2020, "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls -- R code",, Portail Data INRAE, V2, UNF:6:orRB87170pdVwzurwPbM3A== [fileUNF]
R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"
Sep 28, 2020
Leforestier, Rodolphe, 2020, "Numerical simulation program based on Carver-Richards equations for the calculation of the transverse relaxation rate of simple sugars solutions",, Portail Data INRAE, V1
This Scilab program calculates the transverse relaxation rate of sugar solutions modeling the fruit vacuolar content by taking into account various parameters such as the intensity of the magnetic field, the echo time, the temperature and the pH of the sample, the concentration (...
Aug 5, 2020
INRAE, 2020, "Oak Genome Sequencing Website",, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at It provides access to various resources : oak genome b...
Jul 23, 2020 - UEFP Dataverse
Denou, Jean-Luc, 2020, "GéoDispo, un nouvel outil pour géoréférencer facilement les objets d'étude (plantes ligneuses par exemple) dans les dispositifs expérimentaux de terrain",, Portail Data INRAE, V2
Dans la plupart des dispositifs expérimentaux (sylviculture, viticulture, arboriculture), les objets d'étude (dans ces cas des plantes ligneuses) sont identifiés dans un repère orthogonal spécifique au dispositif, avec des coordonnées de type XY qui ne permettent pas directement...
Jul 2, 2020 - Allocation Viande
Wilfart, Aurelie, 2020, "MeatPartTool Software",, Portail Data INRAE, V1
These files are the .exe and .dmg of the MeatPartTool software. These files allow to run the software dedicated to the calculation of allocation factor for meat and meat co-product at the slauhterhouse gates
Jun 23, 2020 - Allocation Viande
Wilfart, Aurelie, 2020, "MeatPartTool Software: code source",, Portail Data INRAE, V1
This zip file corresponds to the source code of the MeatPartTool software. The code is in Python and is free to access.
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