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1 to 10 of 45 Results
Jul 30, 2021 - URGI Plant and Fungi Dataverse
Florian Maumus, 2021, "Clustered IMG VR v3 file: IMGVR70", https://doi.org/10.15454/RZDFOR, Portail Data INRAE, V1
How this file was created? All proteins (n=66,585,678) were retrieved from IMG/VR v3 database (https://genome.jgi.doe.gov/portal/IMG_VR/IMG_VR.home.html) version IMG_VR_2020-10-12_5.1 (https://doi.org/10.1093/nar/gkaa946). We used MMseqs2 (https://doi.org/10.1038/nbt.3988) for si...
Jul 23, 2021
Totozafy, Jean Chrisologue; Boutet, Stephanie; Perreau, François; Mouille, Grégory; Lepiniec, Loïc; Corso, Massimiliano, 2021, "Untargeted lipidomic analyses on seeds of two Camelina sativa varieties cultivated for five consecutive years", https://doi.org/10.15454/ODKCCS, Portail Data INRAE, V1, UNF:6:VO9NqhONY+6xwU81KeTn9Q== [fileUNF]
Samples collection: Six different cultivars of camelina were grown at the experimental farm of Bologna University (Italy) located in Cadriano (Bologna, Italy, 44°30′N, 11°23′E, 32 m a.s.l.) during five consecutive years (2015 - 2019). The six tested cultivars were: MIDAS (AAFC, S...
Jul 9, 2021 - URGI Plant and Fungi Dataverse
Jonathan Kreplak; Grégoire Aubert; Magalie Leveugle; Hervé Duborjal; Jean-Philippe Pichon; Judith Burstin, 2021, "Exome capture genotyping data on the pea Architecture Multi-Stress collection (Peamust project)", https://doi.org/10.15454/3QRIPA, Portail Data INRAE, V1
In the context of Work Package 3 of the PeaMUST project , Genotyping data obtained by exome capture on a 240 accessions pea germplasm panel (AMS collection). You need an account to access data, contact urgi-support@inrae.fr and ask for Peamust project Exome capture genotyping dat...
Jul 5, 2021
Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untargeted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script", https://doi.org/10.15454/A3QKZI, Portail Data INRAE, V2
See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...
Jun 25, 2021 - GAFL
Causse, Mathilde, 2020, "Dataset for QTL detection in a Tomato MAGIC population analysed in a multi-environment experiment", https://doi.org/10.15454/UVZTAV, Portail Data INRAE, V2, UNF:6:nkco+yhSh6cfkeykQFbMGw== [fileUNF]
Description of the data The data described here were produced from the ANR projects ADAPTOM (ANR-13-ADAP-0013) and TomEpiSet (ANR-16-CE20-0014). An 8-way tomato MAGIC population was phenotyped over 12 environments including three geographical location (France, Israel and Morocco)...
Jun 16, 2021 - UMR IGEPP
Bianchetti, Gregoire; Clouet, Vanessa; Legeai, Fabrice; Baron, Cécile; Gazengel, Kévin; Carrillo, Aurélien; Maria J. Manzanares-Dauleux, M-J; Buitink, Julia; Nesi, Nathalie, 2021, "RNA sequencing data for responses to drought stress and/or clubroot pathogen infection in developing seeds of Brassica napus", https://doi.org/10.15454/9OXYM5, Portail Data INRAE, V1, UNF:6:qcdgw+H/MakBEnbMc4Pxew== [fileUNF]
Oilseed rape (Brassica napus L.) is the third largest oil crop worldwide. Like other crops, oilseed rape faces unfavorable environmental conditions resulting from multiple and combined actions of abiotic and biotic constraints that occur throughout the growth cycle. In particular...
Jun 3, 2021 - Biogeco Dataverse
Ehrenmann, Francois; Chaumeil,Philippe; Plomion, Christophe, 2021, "Plan de Gestion de Données UMR BIOGECO", https://doi.org/10.15454/XS1RPM, Portail Data INRAE, V2
Plan de gestion des données de l'UMR INRAE BIOGECO Vous pouvez citer le DOI de ce plan comme source, mais l'utilisation de toute partie mise à jour de ce plan n'implique pas que le(s) créateur(s) soutienne(nt) ou ait(nt) un quelconque lien avec votre projet ou votre soumission. C...
May 25, 2021
Brault, Charlotte; Flutre, Timothée; Doligez, Agnès, 2021, "Scripts and data of the genetic analysis of Syrah x Grenache progeny", https://doi.org/10.15454/NOUQY2, Portail Data INRAE, V1, UNF:6:cPuUhPCLt7WlQDM7mknnWA== [fileUNF]
R-scripts and data associated with the publication "Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine". Article abstract: Viticulture has to cope with climate change and decrease pesticide inputs,...
May 25, 2021
Brault, Charlotte; Flutre, Timothée; Launay, Amandine; Doligez, Agnès; Chouiki, Hajar; Sarah, Gautier; Mournet, Pierre, 2021, "Genotypic data and genetic map for Syrah x Grenache bi-parental grapevine population", https://doi.org/10.15454/QEDX2V, Portail Data INRAE, V1, UNF:6:L5hd7gugVIod43JkBypJvQ== [fileUNF]
This dataset, intended for QTL detection and genomic prediction, includes : 1) the SNP genotyping data, in vcf format, obtained by GBS in a grapevine bi-parental population, and the script for formatting the data before building the genetic map; 2) the script and custom R functio...
May 6, 2021 - UMR IGEPP
Bianchetti, Grégoire; Baron, Cécile; Carrillo, Aurélien; Berardocco, Solenne; Marnet, Nathalie; Wagner, Marie-Hélène; Demilly, Didier; Ducournau, Sylvie; Manzanarès-Dauleux, Marie.J.; Le Cahérec, Françoise; Buitink, Julia; Nesi, Nathalie, 2021, "Dataset for the metabolic and physiological characterization of seeds from oilseed rape (Brassica napus L.) plants grown under single or combined effects of drought and clubroot pathogen Plasmodiophora brassicae", https://doi.org/10.15454/SNRK0V, Portail Data INRAE, V1, UNF:6:V/rvlcoPQOsTqOm3r7v0UA== [fileUNF]
Faced with the challenges of adapting agriculture to climate change, seed production should have increased resilience to abiotic stress factors and the expected proliferation of pathogens. This concerns both the nutritional quality and seed vigor, two crucial factors in seedling...
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