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Sep 27, 2021
Lepage, Hugo; Gruat, Alexandra; THOLLET, FABIEN; Le Coz, Jérôme; Coquery, Marina; Masson, Matthieu; Dabrin, Aymeric; Radakovitch, Olivier; Eyrolle, Frédérique; Labille, Jérôme; Ambrosi Jean-Paul; Delanghe, Doriane; Raimbault, Patrick, 2021, "Concentrations and fluxes of suspended particulate matters and associated contaminants in the Rhône River from Lake Geneva to the Mediterranean Sea",, Portail Data INRAE, V1
The dataset contains the concentrations and fluxes of SPM as well as the concentrations and fluxes of several particle bound contaminants of concern (PCB, TME, radionuclides), the particle size distribution and the particulate organic carbon of SPM. Sediment traps or continuous f...
Sep 27, 2021 - Biogeco Dataverse
Penaud, Benjamin; Dutech, Cyril; Laurent, Benoît, 2021, "SNP4OrphanSpecies: A bio-informatic pipeline to isolate robust molecular markers for phylogeny, phylogeographical and population genetic studies in non-model species.",, Portail Data INRAE, V1
This pipeline performs a de-novo genome assembly, identifies single copy genes in the genome, and designs several pools of pair of primers for amplifying regions of these genes in multiplex. The pipeline is implemented in a SnakeMake workflow and uses Illumina data for the de-nov...
application/x-xz - 2.3 GB - MD5: 021df00a03951682ca32231abd2aa23a
Genomic data and all the results obtained by the pipeline for Diplodia sapinea
application/x-xz - 17.6 KB - MD5: d00d008e7af9e6ee0a94cc3c7140d41e
All the scripts of the workflow analysis and for building the container
application/x-xz - 90.0 KB - MD5: 265ea3a7b1f8d6694e12a4b5cc4f1f05
Pools of primers obtained for Bursaphelenchus xylophilus
application/x-xz - 63.6 KB - MD5: f4465f08c3bd3ab26f2bea46bf839f5e
Pools of primers obtained for Erysiphe alphitoides
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