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1 to 10 of 11 Results
May 18, 2021
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V3
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
May 12, 2021 - UMR IGEPP
Solenn Stoeckel, 2021, "The discernible and hidden effects of clonality on the genotypic and genetic states of populations: improving our estimation of clonal rates", https://doi.org/10.15454/FEQ1Z6, Portail Data INRAE, V1
Partial clonality is widespread across the tree of life, but most population genetics models are designed for exclusively clonal or sexual organisms. This gap hampers our understanding of the influence of clonality on evolutionary trajectories and the interpretation of population...
Apr 16, 2021
Larue, Clement, 2021, "Intensive study site: INRAE chestnut germplasm collection (Domaine de la Grande Ferrade, Villenave d'Ornon)", https://doi.org/10.15454/GSJSWW, Portail Data INRAE, V7, UNF:6:iAR0+WJ5nZvJADvW/94RFQ== [fileUNF]
This intensive study plot is located in Villenave d’Ornon, near Bordeaux in southwestern France (44.788319 N, -0.577062 E). It includes the INRAE chestnut germplasm collection and all isolated trees located in the immediate surroundings (<1 km from the INRAE research site). The g...
Mar 19, 2021 - Vocabulaires Ouverts
DipSO, 2021, "Thésaurus INRAE", https://doi.org/10.15454/J8GANU, Portail Data INRAE, V1
Thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de données, à des fins de recherche ou d’analyse de l’information. En savoir plus...
Mar 9, 2021
Larue, Clement, 2021, "Development of SNP markers for the identification of chestnut species, hybrids and varieties", https://doi.org/10.15454/XEMDLD, Portail Data INRAE, V2, UNF:6:eJQwJJ12X/74swiSKl9V2A== [fileUNF]
Three chestnut species (Castanea sativa, Castanea crenata and Castanea mollissima) and their hybrids have been massively planted worldwide for nut production. To better study and manage these trees, we identified nuclear single nucleotide polymorphism (SNP) markers using restrict...
Feb 16, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia, 2021, "Plant Bioinformatics Facility data management plan", https://doi.org/10.15454/9HM5UI, Portail Data INRAE, V1
Data management plan of the Plant Bioinformatics Facility, hosted at URGI. Copyrights The creator(s) of this plan accept(s) that all or part of the text may be reused and personalized if necessary for another plan. You can cite this plan’s DOI as the source, but the use of any up...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 1, 2020
Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2
Ready to use database adapted from Diat.barcode v9 for MOTHUR
Aug 5, 2020
INRAE, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
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