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1 to 10 of 103 Results
Jul 28, 2021 - Omics Dataverse
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/PL3HWQ, Portail Data INRAE, V2
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Jul 22, 2021
ORELLANA-TORREJON, Carolina; Tiphaine, Vidal; Boixel, Anne-Lise; Gélisse,Sandrine; Saint-Jean, Sébastien; Suffert, Frédéric, 2021, "Dataset of a two-year field experiment on the dynamics of Zymoseptoria tritici populations in wheat cultivar mixtures", https://doi.org/10.15454/4MAAI0, Portail Data INRAE, V1, UNF:6:5STsGp66zLCYZ/CBzPaR2A== [fileUNF]
The data and the R scripts that support the findings of this study
Jul 9, 2021 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V6
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Jun 7, 2021
Simonin, Marie; Barret, Matthieu, 2021, "Seed Microbiota Database", https://doi.org/10.15454/2ANNJM, Portail Data INRAE, V2, UNF:6:qmyXzIL+/FEATj0EoRC3lA== [fileUNF]
This dataset compiles all the data of the Seed Microbiota Database associated to the publication Simonin et al. 2021 (BioRxiv) Seed microbiota revealed by a large-scale meta-analysis including 50 plant species. This database includes metabarcoding data from 63 seed microbiota stu...
Jun 3, 2021 - Biogeco Dataverse
Ehrenmann, Francois; Chaumeil,Philippe; Plomion, Christophe, 2021, "Plan de Gestion de Données UMR BIOGECO", https://doi.org/10.15454/XS1RPM, Portail Data INRAE, V2
Plan de gestion des données de l'UMR INRAE BIOGECO Vous pouvez citer le DOI de ce plan comme source, mais l'utilisation de toute partie mise à jour de ce plan n'implique pas que le(s) créateur(s) soutienne(nt) ou ait(nt) un quelconque lien avec votre projet ou votre soumission. C...
May 18, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia; Fady, Bruno; Anger, Christel; Bastien, Catherine; Bastien, Jean-Charles; Chancerel, Emilie; Denou, Jean-Luc; Dowkiw, Arnaud; Ducousso, Alexis; Gauvrit, Christophe; Ienhuth, Bernard; Kremer, Antoine; Lefèvre, François; Muratorio, Sylvie; Pâques, Luc; Pastuszka, Patrick; Pichot, Christian; Plomion, Christophe; Puzos, Luc; Raffin, Annie; Rei, Franck; Santi, Frédérique; Severin, Laurent; Thevenet, Jean; Vauthier, Denis; Veisse, Dominique; Verger, Michel; Villar, Marc, 2021, "Datasets from common gardens of the Forest Genetics Network for Research and Experimentation (GEN4X)", https://doi.org/10.15454/50RS8C, Portail Data INRAE, V1
GEN4X (forest genetics network for research and experimentation) is a French network of forest tree common gardens which compare genetic units of varied types (species, sub-species, geographic origins, families, clones) across wide ranging environmental conditions. The initial ob...
May 17, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia; Vauthier, Denis; Fady, Bruno, 2021, "Phenotypic trait dataset of Pinus pinea measured in the common gardens of the Forest Genetics Network for Research and Experimentation (GEN4X)", https://doi.org/10.15454/MQKQ1O, Portail Data INRAE, V1
This dataset is composed of observations such as height, circumference, cone number, survival and forking, made until 2012 in 7 Pinus pinea provenance trials of the French common gardens network GEN4X (forest genetics network for research and experimentation). It makes possible t...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched gene ontology terms in upregulated genes at the transition from J2 to J3-J4 larval stages", https://doi.org/10.15454/VE2MLH, Portail Data INRAE, V1
Analysis of differentially represented (over and under) Gene Ontology (GO) terms in the genes showing significant up-regulation at the transition between the the pre-parasitic J2 and J3-J4 stage. GO over and under representation of terms are according to the hypergeometric test a...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Péré, Arthur; Eves-van den Akker, Sebastian; Bournaud, Caroline, 2021, "Enriched GO terms in predicted dorsal gland effectors", https://doi.org/10.15454/2O77EF, Portail Data INRAE, V1, UNF:6:V3kqvCFEYcsZ8EHNP3r6Ow== [fileUNF]
By cross referencing the list of M. incognita proteins having a predicted signal peptide for secretion and no predicted transmembrane region with the list of proteins encoded by genes with Mel-DOG motifs in their upstream regions, we could predict 457 candidate dorsal gland (DG)...
Apr 26, 2021 - Parasitic transcriptome regulation in M. incognita
Danchin, Etienne; Pere, Arthur, 2021, "Enriched GO terms in the eight clusters of differentially expressed genes", https://doi.org/10.15454/V3SCRC, Portail Data INRAE, V1, UNF:6:zAVi7N8nqLznWAQu0l7wPg== [fileUNF]
Enriched gene ontology terms in each of the eight clusters of differentially-expressed M. incognita genes. For each cluster (A-H), enriched GO terms, as compared to the whole set of differentially expressed genes, were identified using a hypergeometric test as implemented in the...
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