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1 to 10 of 61 Results
Apr 8, 2020
Villellas, Jesus; Martín-Forés, Irene; Mariette, Stéphanie; Massot, Marie; Guichoux, Erwan; Acuña Míguez, Belén; Hampe, Arndt; Valladares, Fernando, 2020, "76 highly validated SNP markers for Juniperus thurifera", https://doi.org/10.15454/TRFS3H, Portail Data INRAE, V1
76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data following Garcia et al., 2018, except the SNP detection which was performed using discoSnp++ (http://colibread.inria.fr/software/discosnp/). PCR primer sequences and single base extension prime...
Dec 1, 2020
Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2
Ready to use database adapted from Diat.barcode v9 for MOTHUR
Apr 1, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "A richer community of Botryosphaeriaceae within a less diverse community of fungal endophytes in grapevines than in adjacent forest trees revealed by a mixed metabarcoding strategy.", https://doi.org/10.15454/JEOT4O, Portail Data INRAE, V1, UNF:6:iSW/6jVVjeRvjMhu7p/7iw== [fileUNF]
Botryosphaeriaceae are a diverse group of endophytic fungi colonizing the inner tissue of many woody species. As opportunist pathogens, they have been increasingly involved in diebacks worldwide. Nonetheless, the diversity of Botryosphaeriaceae, especially in asymptomatic plants,...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
Mar 13, 2020 - AMAP ECOSFIX
Perez, Jerome, 2020, "Base de données ECOSFIX", https://doi.org/10.15454/WAKHNF, Portail Data INRAE, V1, UNF:6:hfvz7vdm0PpK4OfkD7R2Tw== [fileUNF]
Le Projet ECOSFIX vise à structurer, homogénéiser, gérer et analyser des données permettant de déterminer comment un type de forêt affecte les traits physiques et fonctionnels des racines.
Jul 31, 2020
Piffady, Jeremy, 2020, "Biodivers OSCAR project - data for the France Stream macroinvertebrates biodiversity analysis", https://doi.org/10.15454/QY4UVN, Portail Data INRAE, V1
This dataset contains the data that were used in the Biodiversa OSCAR project (Optimising the configuration of woody riparian buffer strips along rivers to enhance biodiversity and ecosystem services) to study the effect of riparian woody buffers percentages on stream macroinvert...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "Bioinformatic scripts used to analyze fungal metabarcoding data obtained from Vitis vinifera leaves", https://doi.org/10.15454/WLHBP6, Portail Data INRAE, V1, UNF:6:LYk3rj9ck7B/6LlcF6oIcQ== [fileUNF]
Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated vineyard at INRA Villenave d'Ornon (France). Amplicon sequence variant (ASV) tables obtained for vine leaves a...
Nov 24, 2020
Ngao, Jerome; Martinez, Sebastien; Marquier, Andre; Bluy, Sylvie; Saint-Joanis, Brigitte; Costes, Evelyne; Pallas, Benoit, 2020, "Carbon and Nitrogen leaf traits on 'Golden Delicious' apple trees", https://doi.org/10.15454/HGONZV, Portail Data INRAE, V2, UNF:6:Ma4lJA03kgPKwmWnmmBUew== [fileUNF]
This dataset was built on ‘Golden Delicious’ apple trees with either high or low crop loads. For these trees, we concomitantly assessed the impacts of intercepted light and crop load on within-tree spatial variability in carbon- and nitrogen-related traits. Furthermore, we analyz...
May 20, 2020 - Experimental - Observation - Simulation Dataverse
Mészáros, Éva; Pistocchi, Chiara; Frossard, Emmanuel; Buenemann, Else K; Tamburini, Federica, 2020, "Changes of fungal and bacterial community composition of forest organic horizons with low and high phosphorus availability", https://doi.org/10.15454/XOFCHY, Portail Data INRAE, V1
This dataset describes the microbial community compostion of two organic horizons from temperate beech forest (Germany). A three-months laboratory incubation experiment with litter addition was set up to assess how P derived from beech litter changed the structure of total microb...
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