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21 to 30 of 397 Results
Dec 20, 2020 - AMAP Tree Root Demography
Mao, Zhun and Stokes, Alexia, 2020, "Tree root elongation and mortality data from the French Alps", https://doi.org/10.15454/C3QY4B, Portail Data INRAE, V1, UNF:6:fsTOvGgDXoUI32FMA8vlZw== [fileUNF]
4 year dataset of monthly measurements of tree root elongation and mortality
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Dec 1, 2020 - Data-OLA Dataverse
Pilla, Rachel; Anneville, Orlane, 2020, "Time series dataset of water temperature profiles during stable summer stratification in Lakes Annecy, Bourget and Geneva", https://doi.org/10.15454/YOLA0Y, Portail Data INRAE, V1, UNF:6:p8kjS9WF/nHsEyh/SNQmHg== [fileUNF]
Data description : Data are temperature profiles recorded in Lakes Geneva, Bourget and Annecy during the summer period of strong thermal stratification. The dataset consists in one profile per year and it covers the periods 1974 to 2013, 1984 to 2013 and 1991 to 2013 for Lakes Ge...
May 6, 2020 - Experimental - Observation - Simulation Dataverse
Morvan, Thierry; Lemoine, Charlotte; Gaillard, Florian; Hamelin, Gaelle; Trinkler, Béatrice; Petitjean, Patrice; Jaffrezic, Anne, 2020, "Time evolution of nitrate, nitrite and dissolved organic carbon concentrations of the water collected by EFELE's lysimeters", https://doi.org/10.15454/RKYCLF, Portail Data INRAE, V1, UNF:6:DvBmhp8otHUHUNOaXu3OfA== [fileUNF]
This dataset is related to the time evolution of nitrate, nitrite and dissolved organic carbon concentrations of the water collected by EFELE’s lysimeters during drainage seasons from 2014-2015 to 2017-2018. EFELE is an experimental site of the SOERE PRO network (https://www6.inr...
May 18, 2020 - SPOmics
Delannoy, Etienne; Jakalski, Marcin; Caïus, José; May, Michał; Minasiewicz, Julita; Selosse, Marc-André, 2020, "The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming", https://doi.org/10.15454/HR9KUX, Portail Data INRAE, V1, UNF:6:jY13iPp6Ar4xBi23WIDSwA== [fileUNF]
this dataset provides the results of the de novo assembly and annotation of RNA-seq data from the mycoheterotrophic orchids Neottia nidus-avis and Epipogium aphyllum. For each species, a gff file, an annotation file and an expression count table is provided. The raw sequencing da...
Apr 6, 2020 - Unité expérimentale d’écologie et d’écotoxicologie aquatique
Jeannot, Nicolas, 2020, "The data rainfall at the level of the trap of mill of princes on Scorff river (Morbihan - France)", https://doi.org/10.15454/TP7DE1, Portail Data INRAE, V3
The data rainfall at the level of the trap of mill of princes on Scorff river collected for the Environmental Research Observatory (ERO) on Diadromous Fish in Coastal rivers (DiaPFC). ORE DiaPFC is a research infrastructure focused on studying the evolution of diadromous fish pop...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
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