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1 to 10 of 19 Results
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
Mar 8, 2019 - Multi Criteria Assessment Methods
Membré, Jeanne-Marie; Aubin, Joël; van der Werf, Hayo; Gésan-Guiziou, Geneviève, 2019, "Annotation data about Multi Criteria Assessment Methods used in Animal Genetics : the French National Institute for Agricultural Research (INRA-GA) experience", https://doi.org/10.15454/DACDJM, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Animal Genetics department. Those researchs aim to understand the genetic determinism of the traits observed in f...
Mar 8, 2019 - Multi Criteria Assessment Methods
Alaphilippe, Aude; Collet, Catherine, 2019, "Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience", https://doi.org/10.15454/3SI1GB, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but e...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne, 2020, "Horizontal gene transfer candidates in M. incognita", https://doi.org/10.15454/W6SWZH, Portail Data INRAE, V1, UNF:6:wuWOjB++Puk5yJOSrDfxWw== [fileUNF]
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a Diamond search against the NCBI's nr library. The following parameters were used in Alienness Taxonomic group...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita candidate effector proteins", https://doi.org/10.15454/CSTXU2, Portail Data INRAE, V1
Accession numbers of M. incognita candidate effectors. These proteins are predicted to be secreted based on the presence of a signal peptide for secretion and absence of transmembrane domains. Furthermore at least one motif known to be enriched in effector proteins is present in...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita predicted secreted proteins", https://doi.org/10.15454/JCYZDI, Portail Data INRAE, V1
To identify putative secreted proteins in the M. incognita protein set (Blanc-Mathieu et al. 2017), we searched for predicted signal peptides (SP) for secretion using SignalP v4 (Petersen, Brunak, von Heijne, & Nielsen, 2011). This program improves the differentiation between tra...
Jul 3, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Da Rocha, Martine, 2020, "M. incognita protein-coding genes expression patterns", https://doi.org/10.15454/YM2DHE, Portail Data INRAE, V1
M. incognita protein-coding genes expression values across 4 life stages in triplicates. Life stages are as follows: - W: eggs - J2: pre-parasitic infective juveniles - J3: infective juveniles (mic of late J2, J3 and J4) - Fem: adult female Two tables are given, one with the raw...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incongnita proteins specific to plant-parasitic nemaotdes", https://doi.org/10.15454/I9MWRS, Portail Data INRAE, V1
Accession numbers of M. incognita predicted proteins having predicted homologs only in other plant-parasitic nematodes (PPN) or being M. incognita-specific.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins", https://doi.org/10.15454/LMY6LV, Portail Data INRAE, V1
MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins M. incognita proteins with at least one of the 4 motifs identified as enriched in the known effector proteins as described in (Vens, Rosso, Danchin, Bioinformatics, 2011)
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