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1 to 10 of 79 Results
Mar 23, 2018 - Omics Dataverse
Legras, Jean-Luc; Galeote, Virginie; Bigey, Frédéric; Camarasa, Carole; Marsit, Souhir; Nidelet, Thibault; Sanchez, Isabelle; Couloux, Arnaud; Guy, Julie; Franco-Duarte, Ricardo; Marcet-Houben, Marina; Gabaldon, Toni; Schuller, Dorit; Sampaio, José Paulo; Dequin, Sylvie, 2018, "Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.", https://doi.org/10.15454/2VZ16D, Portail Data INRAE, V1
Different Variant data set combining genotypic data data from the newly sequenced strains and data from available genomes sequences obtained at SGD. Data at vcf format or at hapmap format (.ped files).
Jun 25, 2018
Loudet, Olivier, 2018, "Raw phenotypic data obtained on the Arabidopsis RILs with the Phenoscope robots (Marchadier, Hanemian, Tisné et al., 2019)", https://doi.org/10.15454/OCOP9B, Portail Data INRAE, V1
This dataset gathers the main raw phenotypic data obtained and exploited in Marchadier, Hanemian, Tisné et al. (2019). It contains data from 4 RIL sets across 9 Phenoscope experiments. For each Phenoscope experiment, Recombinant Inbred Line (RIL) and Condition ('WW' = Well Watere...
Jun 25, 2018
Loudet, Olivier, 2018, "Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2019)", https://doi.org/10.15454/EORHL8, Portail Data INRAE, V1
Each row represents a single HIF and the genotype of the F7 RIL it originates from is indicated along the chromosomes with RIL ID, markers and genotypic conventions from Publiclines http://publiclines.versailles.inra.fr/rils/index (i.e. 'A' = Col allele; 'B' = alternate parental...
Sep 26, 2018 - Omics Dataverse
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data INRAE, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Nov 25, 2018
Hue, Isabelle, 2018, "Bovine embryo gene profiles", https://doi.org/10.15454/GQCART, Portail Data INRAE, V1, UNF:6:g2SHPpkj5oqEQDXhriW4zw== [fileUNF]
Gene Set Enrichment Analyses (GSEA) and Differentially Expressed Genes (DEG) defining the molecular profiles of bovine blastocysts produced in vitro
Feb 7, 2019
Flori, Laurence, 2019, "Data associated to the paper "A genomic map of climate adaptation in Mediterranean cattle breeds" (Flori et al., Molecular Ecology, Epub 2018 Dec 29. doi: 10.1111/mec.15004)", https://doi.org/10.15454/PWKBFB, Portail Data INRAE, V1
This dataset consists of genotypes of 640 animals for 39921 variants (SNPs). Animals belong to 21 Mediterranean cattle populations. The compressed archive contains two files (in plink format): i) a genotyping data file named "MED_set.ped" (640 rows, 79848 columns) that contains,...
Mar 8, 2019 - Multi Criteria Assessment Methods
Membré, Jeanne-Marie; Aubin, Joël; van der Werf, Hayo; Gésan-Guiziou, Geneviève, 2019, "Annotation data about Multi Criteria Assessment Methods used in Animal Genetics : the French National Institute for Agricultural Research (INRA-GA) experience", https://doi.org/10.15454/DACDJM, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Animal Genetics department. Those researchs aim to understand the genetic determinism of the traits observed in f...
Mar 8, 2019 - Multi Criteria Assessment Methods
Alaphilippe, Aude; Collet, Catherine, 2019, "Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience", https://doi.org/10.15454/3SI1GB, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but e...
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