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Type: (datasets) Subject: Omics Type: (datasets) Kind of Data: Dataset

11 to 20 of 79 Results

FeedOmics project - learning and validation databases for blood Nov 17, 2020 - PEGASE GONDRET, Florence, 2020, "FeedOmics project - learning and validation databases for blood", https://doi.org/10.15454/J4XOPD, Portail Data INRAE, V1, UNF:6:LEYk5zT2OraDfSVIubV0Dw== [fileUNF] The FeedOmics project aimed to determine biomarkers of feed efficiency in growing pigs. Here, the files refer to learning and validation databases including transcriptomes of blood from pigs of three different experiments, their class of residual feed intake (RFI+/-) and values f...
Diat.barcode, an open-access barcode library for diatoms Nov 13, 2020 Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10 Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
New insights into homoeologous copy number variations in the hexaploid wheat genome Oct 14, 2020 Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome", https://doi.org/10.15454/C3XH6H, Portail Data INRAE, V1 Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...
Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays" Oct 6, 2020 Jardin, Julien, 2020, "Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays"", https://doi.org/10.15454/AIYGXO, Portail Data INRAE, V1 For many years it was believed that only amino acids, dipeptides and tripeptides could be absorbed and reach the bloodstream. Nowadays, the bioavailability of oligopeptides is also being considered, requiring further research. Hence, in this pilot study, the activity of the brush...
Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129 Sep 22, 2020 Jardin, Julien, 2020, "Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V2 Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surfac...
RNA expression dataset of 384 sunflower hybrids in field condition Sep 9, 2020 Penouilh-Suzette, Charlotte; Blanchet, Nicolas; Bonnafous, Fanny; de Givry, Simon; Dinis, Romain; Brouard, Céline; Duruflé, Harold; Gody, Louise; Grassa, Christopher; Heudelot, Xavier; Laporte, Marion; Mangin, Brigitte; Marage, Gwenola; Mayjonade, Baptiste; Pomiès, Lise; Langlade, Nicolas, 2020, "RNA expression dataset of 384 sunflower hybrids in field condition", https://doi.org/10.15454/HESVA0, Portail Data INRAE, V1, UNF:6:xMjpZQ4qQiTsbFqjJMoTXg== [fileUNF] This article describes how RNA expression data of 173 genes were produced on 384 sunflower hybrids grown in field conditions. Sunflower hybrids were selected to represent genetic diversity within cultivated sunflower. The RNA was extracted from mature leaves at one time 7 days af...
PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF] Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Orthofinder results: raw and annotated orthogroups and list of unassigned proteins Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder results: raw and annotated orthogroups and list of unassigned proteins", https://doi.org/10.15454/ZAYJBC, Portail Data INRAE, V1, UNF:6:8NY/0IDimU6RMU86NxPleg== [fileUNF] Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is available at https://doi.org/10.15454/IIAQOW Four files are provided and described below: 1- Orthogroups.Ge...
M. incognita predicted secreted proteins Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne, 2020, "M. incognita predicted secreted proteins", https://doi.org/10.15454/JCYZDI, Portail Data INRAE, V1 To identify putative secreted proteins in the M. incognita protein set (Blanc-Mathieu et al. 2017), we searched for predicted signal peptides (SP) for secretion using SignalP v4 (Petersen, Brunak, von Heijne, & Nielsen, 2011). This program improves the differentiation between tra...
Global statistics of the orthofinder analysis Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1 General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...

FeedOmics project - learning and validation databases for blood

Nov 17, 2020 - PEGASE

GONDRET, Florence, 2020, "FeedOmics project - learning and validation databases for blood", https://doi.org/10.15454/J4XOPD, Portail Data INRAE, V1, UNF:6:LEYk5zT2OraDfSVIubV0Dw== [fileUNF]

The FeedOmics project aimed to determine biomarkers of feed efficiency in growing pigs. Here, the files refer to learning and validation databases including transcriptomes of blood from pigs of three different experiments, their class of residual feed intake (RFI+/-) and values f...

Diat.barcode, an open-access barcode library for diatoms

Nov 13, 2020

Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10

Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...

New insights into homoeologous copy number variations in the hexaploid wheat genome

Oct 14, 2020

Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome", https://doi.org/10.15454/C3XH6H, Portail Data INRAE, V1

Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...

Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays"

Oct 6, 2020

Jardin, Julien, 2020, "Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays"", https://doi.org/10.15454/AIYGXO, Portail Data INRAE, V1

For many years it was believed that only amino acids, dipeptides and tripeptides could be absorbed and reach the bloodstream. Nowadays, the bioavailability of oligopeptides is also being considered, requiring further research. Hence, in this pilot study, the activity of the brush...

Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129

Sep 22, 2020

Jardin, Julien, 2020, "Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V2

Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surfac...

RNA expression dataset of 384 sunflower hybrids in field condition

Sep 9, 2020

Penouilh-Suzette, Charlotte; Blanchet, Nicolas; Bonnafous, Fanny; de Givry, Simon; Dinis, Romain; Brouard, Céline; Duruflé, Harold; Gody, Louise; Grassa, Christopher; Heudelot, Xavier; Laporte, Marion; Mangin, Brigitte; Marage, Gwenola; Mayjonade, Baptiste; Pomiès, Lise; Langlade, Nicolas, 2020, "RNA expression dataset of 384 sunflower hybrids in field condition", https://doi.org/10.15454/HESVA0, Portail Data INRAE, V1, UNF:6:xMjpZQ4qQiTsbFqjJMoTXg== [fileUNF]

This article describes how RNA expression data of 173 genes were produced on 384 sunflower hybrids grown in field conditions. Sunflower hybrids were selected to represent genetic diversity within cultivated sunflower. The RNA was extracted from mature leaves at one time 7 days af...

PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]

Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...

Orthofinder results: raw and annotated orthogroups and list of unassigned proteins

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder results: raw and annotated orthogroups and list of unassigned proteins", https://doi.org/10.15454/ZAYJBC, Portail Data INRAE, V1, UNF:6:8NY/0IDimU6RMU86NxPleg== [fileUNF]

Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is available at https://doi.org/10.15454/IIAQOW Four files are provided and described below: 1- Orthogroups.Ge...

M. incognita predicted secreted proteins

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne, 2020, "M. incognita predicted secreted proteins", https://doi.org/10.15454/JCYZDI, Portail Data INRAE, V1

To identify putative secreted proteins in the M. incognita protein set (Blanc-Mathieu et al. 2017), we searched for predicted signal peptides (SP) for secretion using SignalP v4 (Petersen, Brunak, von Heijne, & Nielsen, 2011). This program improves the differentiation between tra...

Global statistics of the orthofinder analysis

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1

General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...

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