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101 to 110 of 117 Results
Jul 7, 2020
Ma, Yuxin, 2020, "Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations", https://doi.org/10.15454/JQPBOW, Portail Data INRAE, V2, UNF:6:+Ms4XeqLMk3Aqhstq1K0Wg== [fileUNF]
This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Su...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Feb 21, 2020
Chonova, Teofana; Rimet, Frédéric; Lacroix Sonia; Bouchez Agnès, 2020, "Bioindication diatomées en Guyane française : comparaison microscopie et métabarcoding ADN", https://doi.org/10.15454/YIQFFP, Portail Data INRAE, V1, UNF:6:ZJHoinqTMl2Iyoc8VHxMgQ== [fileUNF]
Description des 3 fichiers csv : - list_morph.csv : Fichier csv donnant les listes floristiques diatomées obtenues en microscopie optique. - list_biomol.csv : Fichier csv donnant les listes floristiques diatomées obtenues en métabarcoding (méthode des séquences) - taxonomy.csv :...
Mar 5, 2019
Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Jacas, Louis; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2019, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline MOTHUR selectionné", https://doi.org/10.15454/1OTGWL, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF]
Le pipeline sélectionné pour produire les listes floristiques utilisées pour calculer les IBD des 447 échantillon est donné ci dessous
Jul 30, 2020
Le Dantec, Loick; Girollet, Nabil; Jérôme, Gouzy; Erika, Sallet; Sébastien, Carrère; Mathieu, Fouché; Jose Quero-Garcia; Elisabeth, Dirlewanger, 2020, "Assembly and annotation of 'Regina' sweet cherry genome", https://doi.org/10.15454/KEW474, Portail Data INRAE, V1
This dataset includes the preliminary assembly and structural annotation of the version 1 (V1) of 'Regina' sweet cherry genome, following genome sequencing using PacBio long reads and optical mapping. We have reconstructed the pseudomolecules at near chromosome level using high d...
Mar 8, 2019 - Multi Criteria Assessment Methods
Alaphilippe, Aude; Collet, Catherine, 2019, "Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience", https://doi.org/10.15454/3SI1GB, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but e...
Mar 8, 2019 - Multi Criteria Assessment Methods
Membré, Jeanne-Marie; Aubin, Joël; van der Werf, Hayo; Gésan-Guiziou, Geneviève, 2019, "Annotation data about Multi Criteria Assessment Methods used in Animal Genetics : the French National Institute for Agricultural Research (INRA-GA) experience", https://doi.org/10.15454/DACDJM, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Animal Genetics department. Those researchs aim to understand the genetic determinism of the traits observed in f...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
Jul 30, 2019 - Omics Dataverse
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF]
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...
Jan 10, 2020 - ThaliaDB maize Dataverse
Nicolas, Stephane; Negro, Sandra; Madur, Delphine; Clipet, Camille; Combes, Valérie; Bauland, Cyril; Tardieu, François; Charcosset, Alain; Moreau, Laurence, 2020, "Amaizing Dent Panel Genotyping Dataset (354 Public Lines)", https://doi.org/10.15454/GAHEU0, Portail Data INRAE, V1, UNF:6:xDkI2MetKCmc6/d1u04ZkA== [fileUNF]
Genotyping matrix of a collection of 354 dent maize inbred lines corresponding to the "Public Amaizing Dent Panel". This panel includes: (i) 254 dent inbred lines from "Drops panel" assembled in the frame of F7P European projects DROPs (FP7-244374, PI: F. Tardieu) and (ii) 100 de...
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