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11 to 20 of 117 Results
May 18, 2020 - SPOmics
Delannoy, Etienne; Jakalski, Marcin; Caïus, José; May, Michał; Minasiewicz, Julita; Selosse, Marc-André, 2020, "The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming", https://doi.org/10.15454/HR9KUX, Portail Data INRAE, V1, UNF:6:jY13iPp6Ar4xBi23WIDSwA== [fileUNF]
this dataset provides the results of the de novo assembly and annotation of RNA-seq data from the mycoheterotrophic orchids Neottia nidus-avis and Epipogium aphyllum. For each species, a gff file, an annotation file and an expression count table is provided. The raw sequencing da...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto, 2020, "Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library", https://doi.org/10.15454/FROF42, Portail Data INRAE, V1
Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available: 1- all the M. incognita proteins as queries 2- PPN-specific M. incognita proteins as queries...
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum”", https://doi.org/10.15454/RWOLLQ, Portail Data INRAE, V1, UNF:6:Mg1hXDjtGpQzxMfjXWjgyg== [fileUNF]
Supplementary tables to manuscript in Chapter 4
Jul 31, 2019
Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments”", https://doi.org/10.15454/UL0OLW, Portail Data INRAE, V1, UNF:6:DnZgs5I2Yfn5qjpU112fKw== [fileUNF]
Supplementary tables to manuscript in Chapter 3.
Aug 7, 2020 - PMB Metabolomics
Deborde, Catherine, 2020, "Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition", https://doi.org/10.15454/WEIXCP, Portail Data INRAE, V2, UNF:6:SOmZDpj3dVza5NuskRNxzA== [fileUNF]
1D 1H-NMR metabolomic profiling of xylem sap in two sunflower cultivars exposed to low Cd concentrations in hydroponics.
Aug 10, 2018
Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1
Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
Sep 9, 2020
Penouilh-Suzette, Charlotte; Blanchet, Nicolas; Bonnafous, Fanny; de Givry, Simon; Dinis, Romain; Brouard, Céline; Duruflé, Harold; Gody, Louise; Grassa, Christopher; Heudelot, Xavier; Laporte, Marion; Mangin, Brigitte; Marage, Gwenola; Mayjonade, Baptiste; Pomiès, Lise; Langlade, Nicolas, 2020, "RNA expression dataset of 384 sunflower hybrids in field condition", https://doi.org/10.15454/HESVA0, Portail Data INRAE, V1, UNF:6:xMjpZQ4qQiTsbFqjJMoTXg== [fileUNF]
This article describes how RNA expression data of 173 genes were produced on 384 sunflower hybrids grown in field conditions. Sunflower hybrids were selected to represent genetic diversity within cultivated sunflower. The RNA was extracted from mature leaves at one time 7 days af...
Dec 10, 2020
Maillet, Aurelien; Bouju-Albert, Agnès; Roblin, Steven; Vaissié, Pauline; Leuillet, Sébastien; Xavier, Dousset; Jaffrès, Emmanuel; Combrisson, Jérôme; Prévost, Hervé, 2020, "Replication data for : Impact of DNA extraction and sampling methods on bacterial communities monitored by 16S rDNA metabarcoding in cold-smoked salmon and processing plant surfaces", https://doi.org/10.15454/34LLGN, Portail Data INRAE, V1, UNF:6:Y4M66Nm6dM6RkbbWiFEqzw== [fileUNF]
Information data on the diversity of bacterial communities present on 12 samples of cold smoked salmon, 18 samples of stainless steal coupons placed in a food processing environment and 115 samples of stainless steal and tri-polyurethane coupons placed in a food processing enviro...
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