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81 to 90 of 90 Results
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3
Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3
Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...
Oct 16, 2018 - BioForA Dataverse
Rogier, Odile; Chateigner, Aurélien; Amanzougarene, Souhila; Lesage-Descauses, Marie-Claude; Balzergue, Sandrine; Brunaud, Véronique; Caius, José; Soubigou-Taconnat, Ludivine; Jorge, Véronique; Segura, Vincent, 2018, "Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra", https://doi.org/10.15454/KZOPZB, Portail Data INRAE, V1
This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra"
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
Oct 1, 2018 - Biogeco Dataverse
Caignard, Thomas; Kremer, Antoine, 2018, "TREEPEACE: Heritability and genetic architecture of reproduction-related traits in a temperate oak species", https://doi.org/10.15454/PGKKTK, Portail Data INRAE, V1, UNF:6:jSMwkS9b86gQdDfMCdgKsA== [fileUNF]
The dataset contains data characterizing the reproduction of 342 trees monitored during four years, from 2014 to 2017, within a full-sib family of pedunculated oak (Quercus robur) situated at the experimental unit of Bourran, France. Trees were planted within a randomized incompl...
Sep 26, 2018 - Omics Dataverse
Deborde, Catherine; Fontaine, Jean-Xavier; Molinié, Roland; Botana, Adolfo; Jacob, Daniel, 2018, "1D 1H-NMR profiling of wheat samples", https://doi.org/10.15454/ERCVZR, Portail Data INRAE, V1
NMR metabolomic profiling of wheat samples recorded on three sites (JEOL400, Bruker 500 and Bruker 600 MHz) - To be used with NMRProcFlow (https://nmrprocflow.org)
Aug 21, 2018
Mestre, Pere; Le Paslier, Marie-Christine; Adam-Blondon, Anne-Françoise, 2018, "Resequencing of seven genotypes of Muscadinia rotundifolia (Illumina GAII PE 2x100bp, about 10x)", https://doi.org/10.15454/1.5009976984187844E12, Portail Data INRAE, V2
Abstract:Muscadinia rotundifolia, an American species related to the European grapevine Vitis vinifera, has a high level of resistance to grapevine diseases. Backcross-based introgression has been used in French breeding programmes to transfer resistance factors from M. rotundifo...
Aug 20, 2018 - GnpIS Dataverse
François-Xavier Oury; Emmanuel Heumez; Bernard Rolland; Jérôme Auzanneau; Pierre Bérard; Maryse Brancourt-Hulmel; Xavier Charrier; Hubert Chiron; Camille Depatureaux; Laurent Falchetto; Olivier Gardet; Stéphane Gilles; Alex Giraud; Christophe Lecomte; Jean-Yves Morlais; Pierre Pluchard; Didier Tropée; Maxime Trottet; Patrice Walczak; Gérard Doussinault; Michel Rousset; Gilles Charmet, 2018, "Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network.", https://doi.org/10.15454/1.4489666216568333E12, Portail Data INRAE, V5
Abstract:Winter wheat phenotypic data from a French experimental network. It includes observations for different characters (agronomic, quality, disease, phenology,…) on more than 10 experimental locations during more than 15 years and for more than 1700 winter wheat genotypes.
Apr 13, 2018 - Biogeco Dataverse
Lesur Kupin, Isabelle, 2018, "TREEPEACE: Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand", https://doi.org/10.15454/OMO2JC, Portail Data INRAE, V1
Le jeu de données est constitué de 191,281 SNPs identifiés dans 297 arbres (mélange de Q. robur et Q. petraea) situés dans la forêt de La Petite Charnie. Ces SNPs ont été détectés sur le génome de référence du chêne 3P, obtenu dans le cadre du projet ANR Genoak et hébergé par l'U...
Mar 30, 2018 - Experimental - Observation - Simulation Dataverse
Rincent, Renaud, 2018, "Phenomic selection, Rincent et al.", https://doi.org/10.15454/MB4G3T, Portail Data INRAE, V1
This dataset supports the study of Rincent et al. (2018) about phenomic and genomic selections. It includes genotypes, NIRS, and phenotypes of the poplar and winter wheat panels.
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