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1 to 10 of 40 Results
Jul 18, 2018 - Experimental - Observation - Simulation Dataverse
Muneret, Lucile; Mitchell Matthew; Seufert, Verena; Aviron, Stéphanie; Djoudi, El Aziz; Pétillon, Julien; Plantegenest, Manuel; Thiéry, Denis; Rusch, Adrien, 2018, "Evidence that organic farming promotes pest control", https://doi.org/10.15454/DV8LMF, Portail Data INRAE, V1
Data sets used to examine the effect of organic farming on pest control potential and pest infestation levels in agrosystems. The article has been published in July 2018 in Nature Sustainability.
Aug 3, 2018 - Omics Dataverse
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Dec 3, 2018 - Experimental - Observation - Simulation Dataverse
Mariette, Nicolas; Kröner, Alexander; Mabon, Romain; Montarry, Josselin; Marquer, Bruno; Corbière, Roselyne; Androdias, Annabelle; Andrivon, Didier, 2018, "Sporangia size and number relationship for Phytophthora infestans isolates", https://doi.org/10.15454/BB0WJN, Portail Data INRAE, V1, UNF:6:n2M9Z7zG1mjhlXER7RDCWQ== [fileUNF]
Phenotypic data (sporangia size and sporangia number) of P. infestans isolates obtained in three infection experiments conducted under controlled conditions.
Dec 3, 2018 - Experimental - Observation - Simulation Dataverse
Fournet, Sylvain; Pellan, Lucille; Porte, Catherine; Piriou, Christophe; Grenier, Eric; Montarry, Josselin, 2018, "Replication Data for: Populations of the Beet Cyst Nematode Heterodera schachtii Exhibit Strong Differences in their Life-History Traits Across Changing Thermal Conditions", https://doi.org/10.15454/ZKGTAH, Portail Data INRAE, V1, UNF:6:kGELlMGJlDIZ67eLVrEq/g== [fileUNF]
It is widely accepted that climate has an essential influence on the distribution of species and that temperature is the major abiotic factor that affects their life-history traits. Species with very restricted active dispersal abilities and a wide geographical distribution are t...
Mar 8, 2019 - Multi Criteria Assessment Methods
Gésan-Guiziou, Geneviève; Alaphilippe, Aude; Andro, Mathieu; Aubin, Joël; Bockstaller, Christian; Botreau, Raphaëlle; Buche, Patrice; Collet, Catherine; Darmon, Nicole; Delabuis, Monique; Girard, Agnès; Grateau, Régis; Kansou, Kamal; Martinet, Vincent; Membré, Jeanne-Marie; Sabbadin, Régis; Soler, Louis-Georges; Thiollet-Scholtus, Marie; Tonda, Alberto; Van-Der-Werf, Hayo, 2019, "Annotation data about Multi Criteria Assessment Methods used in the agri-food research : the French National Institute for Agricultural Research (INRA) experience", https://doi.org/10.15454/WB51LL, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]
This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers.
May 7, 2019 - Omics Dataverse
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "DNA metabarcoding of foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/3DPFNJ, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platfor...
May 9, 2019 - Omics Dataverse
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...
Jul 12, 2019
Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1
This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...
Jul 30, 2019 - Omics Dataverse
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF]
This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...
Nov 5, 2019
VOISIN, Anne-Sophie; JOURNET, Etienne-Pascal; LEISER, Hugues; CABANAC, Guillaume, 2019, "Ecophysiology and Grain-Legumes WoS DataSet 1980-2018", https://doi.org/10.15454/F0CNNS, Portail Data INRAE, V1, UNF:6:IMRDDP4bNCY3/dwDTQpwNA== [fileUNF]
The text file corresponds to the search query capturing the main ecophysiology research theme on grain-legumes (both soya and pulses, see Species Grain-Legumes WoS dataset) to be applied on the WoS (Web of Knowledge). This search query is restricted to the main types of scientifi...
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