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11 to 20 of 40 Results
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incongnita proteins specific to plant-parasitic nemaotdes", https://doi.org/10.15454/I9MWRS, Portail Data INRAE, V1
Accession numbers of M. incognita predicted proteins having predicted homologs only in other plant-parasitic nematodes (PPN) or being M. incognita-specific.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne, 2020, "Horizontal gene transfer candidates in M. incognita", https://doi.org/10.15454/W6SWZH, Portail Data INRAE, V1, UNF:6:wuWOjB++Puk5yJOSrDfxWw== [fileUNF]
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a Diamond search against the NCBI's nr library. The following parameters were used in Alienness Taxonomic group...
Aug 7, 2020 - CORNPESTS
Sanane, Inoussa; Dillmann, Christine; Legrand, Judith; Marion-Poll, Frédéric, 2020, "R scripts and datas for the analysis of Lepidoptera feeding bioassays", https://doi.org/10.15454/CRIUDY, Portail Data INRAE, V2, UNF:6:hTGs+txMHPvB7l9yZIPEzg== [fileUNF]
Rscripts, raw datas, and documentation associated to the statistical analysis of the data produced by the Sanane Lepidoptera feeding bioassay.
Aug 5, 2020 - CORNPESTS
Sanane, Inoussa; Dillmann, Christine; Marion-Poll, Frédéric, 2020, "Instructions for the building of the Sanane lepidoptera larvae feeding bioassay device", https://doi.org/10.15454/UVXKDJ, Portail Data INRAE, V1
This Dataset contains the blueprints and the instructions to build-up a high-throughput device for Lepidoptera larvae feeding bioassays
Aug 5, 2020
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Hassanaly-Goulamhoussen, Rahim; Danchin, Eienne, 2020, "Experimental validations of TE-impacted coding or regulatory loci", https://doi.org/10.15454/NQAF31, Portail Data INRAE, V2
Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region surrounding the insertion point, TE frequency values per isolate, experimental design (primers sequences, Tm), ii)...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
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