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1 to 10 of 20 Results
Apr 8, 2020
Villellas, Jesus; Martín-Forés, Irene; Mariette, Stéphanie; Massot, Marie; Guichoux, Erwan; Acuña Míguez, Belén; Hampe, Arndt; Valladares, Fernando, 2020, "76 highly validated SNP markers for Juniperus thurifera", https://doi.org/10.15454/TRFS3H, Portail Data INRAE, V1
76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data following Garcia et al., 2018, except the SNP detection which was performed using discoSnp++ (http://colibread.inria.fr/software/discosnp/). PCR primer sequences and single base extension prime...
Jan 15, 2021
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V2
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
Dec 1, 2020
Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2
Ready to use database adapted from Diat.barcode v9 for MOTHUR
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
Jul 13, 2020
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Jun 23, 2020Experimental - Observation - Simulation Dataverse
Ce dataverse a pour vocation de rassembler les résultats des travaux réalisés sur les fourrages ligneux (arbres, arbustes ou lianes fourragères), qu’ils concernent leur valeur nutritive, la quantité de biomasse produite ou ingérée ou bien le comportement des animaux. This dataver...
Fruit tree phenology(INRAE - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement)
Jun 17, 2020Unité Expérimentale Horticole
This Dataverse is composed both of phenological data of 5 species of fruit trees (apple, pear, cherry, peach and apricot) present on the Horticulture Experimental Facility, as well as meteorological data.
Dec 30, 2020
Julier, Bernadette, 2020, "Genetic diversity for seed germination in response to temperature and scarification / Diversité génétique pour la germination des graines de luzerne en réponse à la température et à la scarification", https://doi.org/10.15454/YIECZS, Portail Data INRAE, V1, UNF:6:SaRyQd8LfUD4f7gDPMnhiw== [fileUNF]
Lucerne (Medicago sativa), a major perennial pasture legume, belongs to a species complex that includes several subspecies with wild and cultivated populations. Stand establishment may be compromised by poor germination. Seed scarification and deterioration as well as temperature...
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