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1 to 10 of 67 Results
Jul 11, 2019 - Experimental - Observation - Simulation Dataverse
Gaudin, Valerie; Andrey, Philippe, 2019, "A collection of 3D images of Arabidopsis thaliana cell nuclei",, Portail Data INRAE, V1
This dataset contains >200 images of nuclei from Arabidopsis thaliana plantlets. Nuclei were isolated and DAPI-stained prior to confocal imaging. See reference Andrey et al 2010 below for further details on sample preparation and imaging protocols. Following imaging, the images w...
May 21, 2019 - URGI Plant and Fungi Dataverse
Le Paslier, Marie-Christine; Choisne, Nathalie; Bacilieri, Roberto; Boursiquot, Jean-Michel; Bras, Marc; Brunel, Dominique; Chauveau, Aurélie; Hausmann, Ludger; Lacombe, Thierry; Laucou, Valérie; Launay, Amandine; Marchal, Cécile; Martinez-Zapater, José-Miguel; Berard, Aurélie; Quesneville, Hadi; Töpfer, Reinhard; Torres-Perez, Rafael; Adam-Blondon, Anne-Françoise, 2019, "A dataset of 9.896 single nuclear polymorphisms for 112 wild grapes, obtained with the GrapeReSeq 18K Vitis chip",, Portail Data INRAE, V3
The dataset, comprising 9.896 SNPs for 112 wild grapes (Vitis vinifera subsp. sylvestris), is made available here in support of the paper : Ramos-Madrigal J, Wiborg Runge AK, Bouby L, Lacombe T, Samaniego-Castruita JA, Adam-Blondon AF, Figueiral I, Hallavant C, Martínez-Zapater J...
Nov 5, 2019 - URGI Plant and Fungi Dataverse
Millet, Emilie J.; Pommier, Cyril; Buy, Mélanie; Nagel, Axel; Kruijer, Willem; Welz-Bolduan, Therese; Lopez, Jeremy; Richard, Cécile; Racz, Ferenc; Tanzi, Franco; Spitkot, Tamas; Canè, Maria-Angela; Negro, Sandra S.; Coupel-Ledru, Aude; Nicolas, Stéphane D.; Palaffre, Carine; Bauland, Cyril; Praud, Sébastien; Ranc, Nicolas; Presterl, Thomas; Bedo, Zoltan; Tuberosa, Roberto; Usadel, Björn; Charcosset, Alain; van Eeuwijk, Fred A.; Draye, Xavier; Tardieu, François; Welcker, Claude, 2019, "A multi-site experiment in a network of European fields for assessing the maize yield response to environmental scenarios",, Portail Data INRAE, V2, UNF:6:zF9w0A2f+MHeW7maeeXJWA== [fileUNF]
This dataset comes from the European Union project DROPS (DROught-tolerant yielding PlantS). A panel of 256 maize hybrids was grown with two water regimes (irrigated or rainfed), in seven fields in 2012 and 2013, respectively, spread along a climatic transect from western to east...
Jun 13, 2019 - Experimental - Observation - Simulation Dataverse
Le Goff, Noël, 2019, "Above and belowground biomass data for a set of beech trees of different age and crown classes sampled in Hesse state forest (NE France) with a view to analyzing the distribution and the allocation of biomass in the tree",, Portail Data INRAE, V1, UNF:6:HDb+DRUgMjU4MmuN/sKVVA== [fileUNF]
A first set (samples 1 and 2 in the data tables) comprising 23 beech (Fagus sylvatica L.) trees of different crown classes (dominant, co-dominant, intermediate, suppressed), aged 30 in average, was selected and felled in 1996-1997 in a compartment of the state forest of Hesse (NE...
Mar 23, 2018 - Omics Dataverse
Legras, Jean-Luc; Galeote, Virginie; Bigey, Frédéric; Camarasa, Carole; Marsit, Souhir; Nidelet, Thibault; Sanchez, Isabelle; Couloux, Arnaud; Guy, Julie; Franco-Duarte, Ricardo; Marcet-Houben, Marina; Gabaldon, Toni; Schuller, Dorit; Sampaio, José Paulo; Dequin, Sylvie, 2018, "Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication.",, Portail Data INRAE, V1
Different Variant data set combining genotypic data data from the newly sequenced strains and data from available genomes sequences obtained at SGD. Data at vcf format or at hapmap format (.ped files).
Jan 10, 2020 - ThaliaDB maize Dataverse
Nicolas, Stephane; Negro, Sandra; Madur, Delphine; Clipet, Camille; Combes, Valérie; Bauland, Cyril; Tardieu, François; Charcosset, Alain; Moreau, Laurence, 2020, "Amaizing Dent Panel Genotyping Dataset (354 Public Lines)",, Portail Data INRAE, V1, UNF:6:xDkI2MetKCmc6/d1u04ZkA== [fileUNF]
Genotyping matrix of a collection of 354 dent maize inbred lines corresponding to the "Public Amaizing Dent Panel". This panel includes: (i) 254 dent inbred lines from "Drops panel" assembled in the frame of F7P European projects DROPs (FP7-244374, PI: F. Tardieu) and (ii) 100 de...
Oct 22, 2020
Muranty, Hélène; Howard, Nicholas P.; Denancé, Caroline; Le Paslier, Marie-Christine; Berard, Aurélie, 2020, "Apple REFPOP progeny mid-density genotypic data",, Portail Data INRAE, V1
This dataset corresponds to the curated genotypic data used for the progeny group of the apple reference population used by Jung et al (2020) "The apple REFPOP - a reference population for genomics-assisted breeding in apple" Horticulture Research, 7:189. The dataset was obtained...
Nov 25, 2018
Hue, Isabelle, 2018, "Bovine embryo gene profiles",, Portail Data INRAE, V1, UNF:6:g2SHPpkj5oqEQDXhriW4zw== [fileUNF]
Gene Set Enrichment Analyses (GSEA) and Differentially Expressed Genes (DEG) defining the molecular profiles of bovine blastocysts produced in vitro
Nov 24, 2020
Ngao, Jerome; Martinez, Sebastien; Marquier, Andre; Bluy, Sylvie; Saint-Joanis, Brigitte; Costes, Evelyne; Pallas, Benoit, 2020, "Carbon and Nitrogen leaf traits on 'Golden Delicious' apple trees",, Portail Data INRAE, V2, UNF:6:Ma4lJA03kgPKwmWnmmBUew== [fileUNF]
This dataset was built on ‘Golden Delicious’ apple trees with either high or low crop loads. For these trees, we concomitantly assessed the impacts of intercepted light and crop load on within-tree spatial variability in carbon- and nitrogen-related traits. Furthermore, we analyz...
May 20, 2020 - Experimental - Observation - Simulation Dataverse
Mészáros, Éva; Pistocchi, Chiara; Frossard, Emmanuel; Buenemann, Else K; Tamburini, Federica, 2020, "Changes of fungal and bacterial community composition of forest organic horizons with low and high phosphorus availability",, Portail Data INRAE, V1
This dataset describes the microbial community compostion of two organic horizons from temperate beech forest (Germany). A three-months laboratory incubation experiment with litter addition was set up to assess how P derived from beech litter changed the structure of total microb...
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