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1 to 10 of 40 Results
Jan 11, 2021
Plancade, Sandra, 2021, "A stochastic process modelling of phyllochron : script and experimental data from the ITEMAIZE project", https://doi.org/10.15454/CUEHO6, Portail Data INRAE, V1, UNF:6:qoCrkWne08EUiI/jSov3ow== [fileUNF]
R script and data to implement the phyllochron model in Plancade et al (2021). See details in Readme.txt.
Jan 28, 2020 - HYCAR
Coron, Laurent; Delaigue, Olivier; Thirel, Guillaume; Dorchies, David; Perrin, Charles; Michel, Claude, 2020, "airGR: Suite of GR Hydrological Models for Precipitation-Runoff Modelling. R package version 1.6.9.27.", https://doi.org/10.15454/EX11NA, Portail Data INRAE, V1
Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A), a snow accumulation and melt model (CemaNeige) and the associated functions for their c...
Jan 22, 2021 - HYCAR
Piazzi, Gaia; Delaigue, Olivier, 2021, "airGRdatassim: Suite of Tools to Perform Ensemble-Based Data Assimilation in GR Hydrological Models. R package version 0.0.3.22.", https://doi.org/10.15454/WEYYVZ, Portail Data INRAE, V1
Add-on to the 'airGR' package which provides the tools to assimilate observed discharges in daily GR hydrological model. The package consists in two functions allowing to perform the assimilation of observed discharges via Ensemble Kalman filter or Particle filter.
Jan 23, 2020 - HYCAR
Delaigue, Olivier; Coron, Laurent; Brigode, Pierre, 2020, "airGRteaching: Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included). R package version 0.2.9.25.", https://doi.org/10.15454/W0SSKT, Portail Data INRAE, V1
Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed...
Jan 2, 2020
Lepais, Olivier, 2019, "Automated pipeline for sequence-based microsatellite genotyping", https://doi.org/10.15454/HBXKVA, Portail Data INRAE, V2
Two bash scripts are provided to automated sequence-base microsatellite genotyping from data sequences generated by amplicon sequencing (SSRseq, SSR-GBS or similar approaches as described in Lepais et al. 2019). The first script is used to compare genotype quality generated using...
Jan 23, 2020 - HYCAR
Pelletier, Antoine; Andréassian, Vazken; Delaigue, Olivier, 2020, "baseflow: Computes Hydrograph Separation", https://doi.org/10.15454/Z9IK5N, Portail Data INRAE, V1
R package which computes hydrograph separation using the conceptual automated process from Pelletier and Andreassian (2019) Contains scalar and vectorized functions to compute correlation criterion to calibrate the baseflow separation model.
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "Bioinformatic scripts used to analyze fungal metabarcoding data obtained from Vitis vinifera leaves", https://doi.org/10.15454/WLHBP6, Portail Data INRAE, V1, UNF:6:LYk3rj9ck7B/6LlcF6oIcQ== [fileUNF]
Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated vineyard at INRA Villenave d'Ornon (France). Amplicon sequence variant (ASV) tables obtained for vine leaves a...
Jul 17, 2019
Ay, Jean-Sauveur, 2019, "Classification statistique des vignobles de Côte d'Or", https://doi.org/10.15454/ZZWQMN, Portail Data INRAE, V3
Modélisation statistique des liens entre les attributs naturels des vignobles de Côte-d'Or et la hiérarchie des appellations d'origine contrôlée afin d'estimer un score de qualité pour chaque parcelle et de corriger les effets historiques à l'échelle communale. sur github @ https...
Jan 8, 2019 - Experimental - Observation - Simulation Dataverse
Jullien, Margaux; Navascués, Miguel; Ronfort, Joëlle; Gay, Laurène, 2019, "Code from Structure of multilocus genetic diversity in predominantly selfing populations", https://doi.org/10.15454/VYPXIJ, Portail Data INRAE, V1
We provide here scripts allowing forward simulations of temporal samples in several demographic scenarios using SLiM 2.6, and converting the output into microsatellite data following the stepwise mutation model. The demographic scenarios simulated are: - isolated population of co...
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