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11 to 20 of 30 Results
Oct 31, 2019 - URGI Plant and Fungi Dataverse
Ducournau, Sylvie; Charrier, Aurélie; Wagner, Marie-Hélène; Demilly, Didier; Trigui, Ghassen; Boudehrie-Giresse, Karina; Le Corre, Laurence; Dupont, Audrey; Hamdy, Sherif; Delanoue, Angélique; Ledroit, Lydie; Landais, Laurence; Dürr, Carolyne; Charruaud, Dorothée, 2019, "High throughput phenotyping of seeds from Beta vulgaris genotypes", https://doi.org/10.15454/AKNF4Q, Portail Data INRAE, V1
Dataset obtain by high throughput phenotyping of seed morphology, germination and seedling heterotrophic growth traits on a sugar beet population of genotypes.
Oct 22, 2019 - URGI Plant and Fungi Dataverse
Denancé, Caroline; Muranty, Hélène; Durel, Charles-Eric, 2019, "FruitBreedomics apple high-density SNP genotyping dataset", https://doi.org/10.15454/IOPGYF, Portail Data INRAE, V2, UNF:6:gvcDeRqoTaA/2CpXzy5bjw== [fileUNF]
This dataset contains SNP data obtained by using the Axiom®Apple480K array (Bianco et al., 2016) on 1355 apple accessions from nine mostly European institutions and 92 apple progeny individuals from two parental combinations. Among the accessions, 1341 are diploid, 12 are triploi...
Sep 19, 2019 - Experimental - Observation - Simulation Dataverse
Quilot-Turion, Benedicte, 2019, "Dataset linked to the publication C. Barrasso et al, 2019, "Model-based QTL detection is sensitive to slight modifications in model formulation" in Plos ONE.", https://doi.org/10.15454/MWPXDP, Portail Data INRAE, V4, UNF:6:ZT1Okb//xqLLmaXpr4cmgw== [fileUNF]
This dataset contains raw data used in the publication "Model-based QTL detection is sensitive to slight modifications in model formulation" submitted to Plos ONE journal by Caterina Barrasso, Mohamed-Mahmoud Memah, Michel Génard, Bénédicte Quilot-Turion in March 1st 2019. The "F...
Sep 18, 2019 - Omics Dataverse
Decroocq, Veronique, 2019, "Japanese plum small RNA sequencing", https://doi.org/10.15454/O07SXQ, Portail Data INRAE, V1
Deep sequencing of non-transgenic and eIFiso4G-silenced transgenic Japanese plum (Prunus salicina) small RNA libraries. Cultivar Angeleno. Files are in fastq format, compressed in gz
Sep 17, 2019 - EPGV
Toda, Nicholas, 2019, "NLGenomeSweeper", https://doi.org/10.15454/DS6VIK, Portail Data INRAE, V1
NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...
EPGV(INRAE)
Sep 17, 2019Omics Dataverse
Sep 17, 2019 - ThaliaDB maize Dataverse
Nicolas, Stephane; Joet, Johann; Duarte Jorge; Pichon, Jean-Philippe; Pirani, Ali; Vitte, Clémentine; Riviere, Nathalie; Mabire, 2019, "CNVMaize Indels Affymetrix Axiom Array", https://doi.org/10.15454/DWB4UT, Portail Data INRAE, V1
These three datasets describe the content of Indel Affymetrix Axiom array corresponding to the publication "High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® Axiom® array " of Mabire, Duarte et al., 2019. The Affymetrix Ax...
Aug 5, 2019 - Vocabulaires Ouverts
Verdelet, Daphné; Charruaud, Dorothée, 2019, "Beet Ontology", https://doi.org/10.15454/0JIL23, Portail Data INRAE, V2
This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB, Unversité d'Angers) and breeding companies (Florimond Desprez).
Jul 24, 2019 - Experimental - Observation - Simulation Dataverse
Fréville, Hélène, 2019, "Durum wheat phenotypic and genotypic data associated to the paper Fréville et al (2019) Preferential helping to relatives: a potential mechanism responsible for lower yield of crop variety mixtures? Evolutionary Applications", https://doi.org/10.15454/20RKZ6, Portail Data INRAE, V2, UNF:6:mhBn8IipYlRI+cl5qUEWqg== [fileUNF]
The dataset, comprising phenotypic and genetic data for 52 genotypes of durum wheat (Triticum turgidum ssp. durum), is made available in support of the paper: Fréville H, Roumet P, Rode NA, Rocher A, Latreille M, Muller M-H, David J (2019) Preferential helping to relatives: a pot...
Jun 17, 2019 - ThaliaDB maize Dataverse
Nicolas, Stephane; Negro, Sandra; Millet, Emilie; Bauland, Cyril; Madur, Delphine; Combes, Valérie; Welcker, Claude; Tardieu, François; Charcosset, Alain, 2019, "DROPS maize GWAS analysis dataset", https://doi.org/10.15454/6TL2N4, Portail Data INRAE, V1
This dataset corresponds to the most significant SNP (-log(p-value)>5) identified by genome-wide association studies between the three traits (Flowering Time, Plant Height, Grain Yield) measured in 22 environments on a panel of 247 maize inbred lines. These analysis were conducte...
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