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Type: (dataverses OR datasets OR files) Subject: Plant Health and Pathology

71 to 74 of 74 Results

Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data INRAE, V2 This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. The paper describing the genome is now published in Geno...
Transposable element annotation of Botrytis cinerea B05.10 Oct 19, 2018 - URGI Plant and Fungi Dataverse URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1 The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils. Aug 3, 2018 - Omics Dataverse Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1 This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Evidence that organic farming promotes pest control Jul 18, 2018 - Experimental - Observation - Simulation Dataverse Muneret, Lucile; Mitchell Matthew; Seufert, Verena; Aviron, Stéphanie; Djoudi, El Aziz; Pétillon, Julien; Plantegenest, Manuel; Thiéry, Denis; Rusch, Adrien, 2018, "Evidence that organic farming promotes pest control", https://doi.org/10.15454/DV8LMF, Portail Data INRAE, V1 Data sets used to examine the effect of organic farming on pest control potential and pest infestation levels in agrosystems. The article has been published in July 2018 in Nature Sustainability.

Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia

Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse

Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data INRAE, V2

This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. The paper describing the genome is now published in Geno...

Transposable element annotation of Botrytis cinerea B05.10

Oct 19, 2018 - URGI Plant and Fungi Dataverse

URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1

The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...

DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.

Aug 3, 2018 - Omics Dataverse

Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1

This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...

Evidence that organic farming promotes pest control

Jul 18, 2018 - Experimental - Observation - Simulation Dataverse

Muneret, Lucile; Mitchell Matthew; Seufert, Verena; Aviron, Stéphanie; Djoudi, El Aziz; Pétillon, Julien; Plantegenest, Manuel; Thiéry, Denis; Rusch, Adrien, 2018, "Evidence that organic farming promotes pest control", https://doi.org/10.15454/DV8LMF, Portail Data INRAE, V1

Data sets used to examine the effect of organic farming on pest control potential and pest infestation levels in agrosystems. The article has been published in July 2018 in Nature Sustainability.

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