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11 to 20 of 86 Results
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "PPN-specific M. incognita proteins with no hits against NR", https://doi.org/10.15454/48436V, Portail Data INRAE, V1
Accession numbers of M. incognita proteins specific to plant-parasitic nematodes as determined by the orthofinder analysis and returning no significant hits against the NCBI's NR according to Diamond.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto, 2020, "Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library", https://doi.org/10.15454/FROF42, Portail Data INRAE, V1
Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available: 1- all the M. incognita proteins as queries 2- PPN-specific M. incognita proteins as queries...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incongnita proteins specific to plant-parasitic nemaotdes", https://doi.org/10.15454/I9MWRS, Portail Data INRAE, V1
Accession numbers of M. incognita predicted proteins having predicted homologs only in other plant-parasitic nematodes (PPN) or being M. incognita-specific.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "Meloidogyne incognita Interproscan annotation", https://doi.org/10.15454/9BFFKG, Portail Data INRAE, V1
Interproscan annotation on the 43,718 predicted proteins in the genome of the root-knot nematode Meloidogyne incognita (Blanc-Mathieu et al. 2017, PLoS Genetics). vesrion used: interproscan-5.29-68.0 options used: -dp Disables use of the precalculated match lookup service = all m...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne, 2020, "Horizontal gene transfer candidates in M. incognita", https://doi.org/10.15454/W6SWZH, Portail Data INRAE, V1, UNF:6:wuWOjB++Puk5yJOSrDfxWw== [fileUNF]
Analysis of horizontal gene transfer (HGT) candidates on the M. incognita predicted proteins from (Blanc-Mathieu et al. 2017), using Alienness (Rancurel et al. 2017) on a Diamond search against the NCBI's nr library. The following parameters were used in Alienness Taxonomic group...
Aug 7, 2020 - CORNPESTS
Sanane, Inoussa; Dillmann, Christine; Legrand, Judith; Marion-Poll, Frédéric, 2020, "R scripts and datas for the analysis of Lepidoptera feeding bioassays", https://doi.org/10.15454/CRIUDY, Portail Data INRAE, V2, UNF:6:hTGs+txMHPvB7l9yZIPEzg== [fileUNF]
Rscripts, raw datas, and documentation associated to the statistical analysis of the data produced by the Sanane Lepidoptera feeding bioassay.
Aug 5, 2020 - CORNPESTS
Sanane, Inoussa; Dillmann, Christine; Marion-Poll, Frédéric, 2020, "Instructions for the building of the Sanane lepidoptera larvae feeding bioassay device", https://doi.org/10.15454/UVXKDJ, Portail Data INRAE, V1
This Dataset contains the blueprints and the instructions to build-up a high-throughput device for Lepidoptera larvae feeding bioassays
CORNPESTS(www.inrae.fr)
Aug 5, 2020Experimental - Observation - Simulation Dataverse
The CORNPESTS dataverse encloses data generated by researchers from Institut Diversité, Ecologie, Evolution du Vivant (IDEEV) concerning the interactions between maize and two stem borers, the Mediterranean corn borer Sesamia nonagrioides and the European corn borer Ostrinia nubi...
Aug 5, 2020
Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2
The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Jul 16, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
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