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1 to 10 of 19 Results
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Oct 13, 2020 - Experimental - Observation - Simulation Dataverse
Vandeputte, Marc; Clota, Frédéric; Sadoul, Bastien; Blanc, Marie-Odile; Blondeau-Bidet, Eva; Bégout, Marie-Laure; Cousin, Xavier; Geffroy, Benjamin, 2020, "Data for: Low temperature has opposite effects on sex determination in a marine fish at the larval/post-larval and juvenile stage", https://doi.org/10.15454/QSMRMX, Portail Data INRAE, V1, UNF:6:m8Y0FKwvLlvABQLtFvrTVg== [fileUNF]
This dataset contents: A) biometric and sex data on European sea bass juveniles submitted to 16 different temperature regimes. B) a R workflow (.rmd) to analyze the data in (A) C) gene expression data for ten genes including cyp19a1a and gsdf in fish from 4 of the temperature gro...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Jun 25, 2020 - Chemometrics-Chemhouse
Chauvergne, Celine; Latrille, Eric; Rossard, Virginie; Bonnal, Laurent; Bastianelli, Denis; Griveau, Yves; Mechin, Valerie; Carrere, Helene; Jacquemot, Marie-Pierre; Reymond, Matthieu, 2020, "Spectra transfer models of near infrared spectra of organic waste and plant samples acquired on different spectrometers", https://doi.org/10.15454/XFTLV4, Portail Data INRAE, V1, UNF:6:UYqD1abWZBYKs+GORbnl9Q== [fileUNF]
This dataset presents two sets of raw near infrared spectra of different organic samples acquired on three different spectrometers in three labs: NIRFlex N-500 FT-NIR (BUCHI, France, serial number 1000001305) at LBE in Narbonne, NIR-System5000 (FOSS, Denmark, serial number 946306...
Mar 4, 2020 - Experimental - Observation - Simulation Dataverse
Piry, Sylvain, 2020, "Données de réplication pour : Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa)", https://doi.org/10.15454/NBNSHH, Portail Data INRAE, V1, UNF:6:cpQPAtMbNjDfRmRRgKushw== [fileUNF]
Along with these data, the script MusDakar.r is a template provided as supplementary material of the following article: Claire Stragier, Sylvain Piry, Anne Loiseau, Mamadou Kane, Aliou Sow, Youssoupha Niang, Mamoudou Diallo, Arame Ndiaye, Philippe Gauthier, Marion Borderon, Laure...
Jan 28, 2020 - Multi Criteria Assessment Methods
Sabbadin, Régis, 2020, "Multiple Correspondance Analysis of annotated data about Multi Criteria Assessment Methods used in the agri-food research", https://doi.org/10.15454/5ZTATS, Portail Data INRAE, V1
The annotation of scientific papers has been done in three steps described in detail in a related data paper (Gésan-Guiziou et al. 2019a). Firstly, the set of papers published by INRAE researchers from 2007 to 2017 have been extracted from the Web of Science (WOS) using a set of...
Jul 23, 2019
Leca, Alexandre, 2019, "Leaf wettability", https://doi.org/10.15454/2AVGI9, Portail Data INRAE, V1, UNF:6:6DOpNLa6g88wY+Y1TpNJoQ== [fileUNF]
This dataset contains wettability data in the form of contact angles measured on plant leaves. - First data provided are dynamic (advancing and receding) and receding (deposit and dropped) contact angles of water droplets on apple leaves (8 cultivars) and Parafilm 'M' (control su...
May 9, 2019 - Omics Dataverse
Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1
These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...
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