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Subject: Genetic Resource Publication Year: 2020

11 to 20 of 30 Results

Unité Expérimentale Horticole(www.inrae.fr) Jun 17, 2020Experimental - Observation - Simulation Dataverse L’Unité Expérimentale Horticole (UE Horti) du centre INRAE des Pays de la Loire se situe au cœur du troisième bassin français de production de pommes et de poires, et au cœur du plus grand bassin français de production horticole d'ornement. Elle est implantée sur les sites d’Ange...
Fruit tree phenology(INRAE - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement) Jun 17, 2020Unité Expérimentale Horticole This Dataverse is composed both of phenological data of 5 species of fruit trees (apple, pear, cherry, peach and apricot) present on the Horticulture Experimental Facility, as well as meteorological data.
Fourrages ligneux(INRAE) Jun 23, 2020Experimental - Observation - Simulation Dataverse Ce dataverse a pour vocation de rassembler les résultats des travaux réalisés sur les fourrages ligneux (arbres, arbustes ou lianes fourragères), qu’ils concernent leur valeur nutritive, la quantité de biomasse produite ou ingérée ou bien le comportement des animaux. This dataver...
Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France Jun 30, 2020 Bouffartigue, Cathy; Sandrine Debille; Ana Maria Ramos Cabrer; Olivier Fabreguettes; Santiago Pereira-Lorenzo; Timothée Flutre; Luc Harvengt, 2020, "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", https://doi.org/10.15454/E2DFNJ, Portail Data INRAE, V1, UNF:6:0lpmASDvoFi+pHtRkZQiEw== [fileUNF] To ensure methodological reproducibility the datasets used in "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", Rmd and bash files used to perform all analyses used in the article, are stored here. Please sta...
EPITREE project - WGS SNPs Oak Jul 13, 2020 Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1 In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Oak Genome Sequencing Website Aug 5, 2020 Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2 The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...
Medicago truncatula flowering time data from: Evolution of flowering time in a selfing annual plant - Roles of adaptation and genetic drift Aug 21, 2020 Gay, Laurene, 2020, "Medicago truncatula flowering time data from: Evolution of flowering time in a selfing annual plant - Roles of adaptation and genetic drift", https://doi.org/10.15454/ZY83BE, Portail Data INRAE, V2, UNF:6:EYGBdIWfR2tTf7gjNCz0jw== [fileUNF] Phenotypic and genetic dataset for a population of Medicago truncatula located in Cape Corsica (CO3), analysed in "Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift". The readme file summarizes the different datasets available.
MUNQ - Malus UNiQue genotype code for grouping apple accessions corresponding to a unique genotypic profile Sep 15, 2020 Denancé, Caroline; Muranty, Hélène; Durel, Charles-Eric, 2020, "MUNQ - Malus UNiQue genotype code for grouping apple accessions corresponding to a unique genotypic profile", https://doi.org/10.15454/HKGMAS, Portail Data INRAE, V1 This dataset corresponds to the assignment of MUNQ (Malus UNiQue genotype) codes to a large set of apple accessions genotyped with common SSR (microsatellite) markers. The MUNQ assignment was performed as described in Muranty-Denancé et al. (2020; https://doi.org/10.1186/s12870-0...
Needle and stem histogical data for Pinus pinaster plasticity study Sep 21, 2020 - Biogeco Dataverse Bert, Didier; Le Provost, Grégoire; Delzon, Sylvain; Plomion, Christophe; Gion, Jean-Marc, 2020, "Needle and stem histogical data for Pinus pinaster plasticity study", https://doi.org/10.15454/N8GLMY, Portail Data INRAE, V1 This dataset contains the data that correspond to the article "Needle anatomic plasticity is related to better water-use efficiency and resistance to embolism in fast-growing Pinus pinaster families in conditions of water scarcity". The dataset is composed of two files: Variables...
Select SNP for Imputation(INRA - Institut National de la Recherche Agronomique) Dec 1, 2020PEGASE Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a...

Unité Expérimentale Horticole(www.inrae.fr)

Jun 17, 2020Experimental - Observation - Simulation Dataverse

L’Unité Expérimentale Horticole (UE Horti) du centre INRAE des Pays de la Loire se situe au cœur du troisième bassin français de production de pommes et de poires, et au cœur du plus grand bassin français de production horticole d'ornement. Elle est implantée sur les sites d’Ange...

Fruit tree phenology(INRAE - Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement)

Jun 17, 2020Unité Expérimentale Horticole

This Dataverse is composed both of phenological data of 5 species of fruit trees (apple, pear, cherry, peach and apricot) present on the Horticulture Experimental Facility, as well as meteorological data.

Fourrages ligneux(INRAE)

Jun 23, 2020Experimental - Observation - Simulation Dataverse

Ce dataverse a pour vocation de rassembler les résultats des travaux réalisés sur les fourrages ligneux (arbres, arbustes ou lianes fourragères), qu’ils concernent leur valeur nutritive, la quantité de biomasse produite ou ingérée ou bien le comportement des animaux. This dataver...

Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France

Jun 30, 2020

Bouffartigue, Cathy; Sandrine Debille; Ana Maria Ramos Cabrer; Olivier Fabreguettes; Santiago Pereira-Lorenzo; Timothée Flutre; Luc Harvengt, 2020, "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", https://doi.org/10.15454/E2DFNJ, Portail Data INRAE, V1, UNF:6:0lpmASDvoFi+pHtRkZQiEw== [fileUNF]

To ensure methodological reproducibility the datasets used in "Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France", Rmd and bash files used to perform all analyses used in the article, are stored here. Please sta...

EPITREE project - WGS SNPs Oak

Jul 13, 2020

Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1

In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...

Oak Genome Sequencing Website

Aug 5, 2020

Ehrenmann, Francois; Plomion, Christophe, 2020, "Oak Genome Sequencing Website", https://doi.org/10.15454/WSMRIN, Portail Data INRAE, V2

The oak genome sequencing website, concerning the sequencing of the oak genome and identification of genes important for the adaptation of forest trees, is a permanent resource by INRAE, available at http://www.oakgenome.fr/. It provides access to various resources : oak genome b...

Medicago truncatula flowering time data from: Evolution of flowering time in a selfing annual plant - Roles of adaptation and genetic drift

Aug 21, 2020

Gay, Laurene, 2020, "Medicago truncatula flowering time data from: Evolution of flowering time in a selfing annual plant - Roles of adaptation and genetic drift", https://doi.org/10.15454/ZY83BE, Portail Data INRAE, V2, UNF:6:EYGBdIWfR2tTf7gjNCz0jw== [fileUNF]

Phenotypic and genetic dataset for a population of Medicago truncatula located in Cape Corsica (CO3), analysed in "Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift". The readme file summarizes the different datasets available.

MUNQ - Malus UNiQue genotype code for grouping apple accessions corresponding to a unique genotypic profile

Sep 15, 2020

Denancé, Caroline; Muranty, Hélène; Durel, Charles-Eric, 2020, "MUNQ - Malus UNiQue genotype code for grouping apple accessions corresponding to a unique genotypic profile", https://doi.org/10.15454/HKGMAS, Portail Data INRAE, V1

This dataset corresponds to the assignment of MUNQ (Malus UNiQue genotype) codes to a large set of apple accessions genotyped with common SSR (microsatellite) markers. The MUNQ assignment was performed as described in Muranty-Denancé et al. (2020; https://doi.org/10.1186/s12870-0...

Needle and stem histogical data for Pinus pinaster plasticity study

Sep 21, 2020 - Biogeco Dataverse

Bert, Didier; Le Provost, Grégoire; Delzon, Sylvain; Plomion, Christophe; Gion, Jean-Marc, 2020, "Needle and stem histogical data for Pinus pinaster plasticity study", https://doi.org/10.15454/N8GLMY, Portail Data INRAE, V1

This dataset contains the data that correspond to the article "Needle anatomic plasticity is related to better water-use efficiency and resistance to embolism in fast-growing Pinus pinaster families in conditions of water scarcity". The dataset is composed of two files: Variables...

Select SNP for Imputation(INRA - Institut National de la Recherche Agronomique)

Dec 1, 2020PEGASE

Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a...

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