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1 to 10 of 30 Results
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Oct 31, 2019 - Vocabulaires Ouverts
Buche, Patrice, 2019, "Source codes associated with an aligment method which permits to align food sources using LanguaL as background knowledge", https://doi.org/10.15454/KYZAW5, Portail Data INRAE, V1, UNF:6:ByAyenz+6QfFlhzNB5HuAw== [fileUNF]
This dataset contains source codes associated with an aligment method which permits to align food sources using LanguaL as background knowledge
Feb 11, 2019 - Data-OLA Dataverse
Schellenberger, Antoine; Monet, Ghislaine; Barbet, Denis; Maurice, Damien; Enrico, Guillaume; Fiocca, Amélie, 2019, "Software Architecture of the OLA Observatory Information System for Lake Environmental Research", https://doi.org/10.15454/VBWYWG, Portail Data INRAE, V2
OLA Information system (©SOERE OLA-IS, AnaEE-France, INRA Thonon-les-Bains, developed by Eco-Informatics ORE INRA Team) has been developed to meet data management needs of lake environmental research observatories in order to make data available for scientific communities. Softwa...
Jan 18, 2019 - Experimental - Observation - Simulation Dataverse
Schellenberger, Antoine; Tcherniatinsky, Philippe; Yayende-Guedoka, Vivianne-Judith; Yahiaoui, Rachid; Maurice, Damien; Monet, Ghislaine, 2019, "Software architecture for environnemental research observatories information systems: central component", https://doi.org/10.15454/QJJJZU, Portail Data INRAE, V1
Information systems have been developed to meet data management needs of environmental research observatories in order to make data available for scientific communities. Software architecture of these IS is structured around (i) a central component dedicated to generic functions...
Dec 12, 2018 - Experimental - Observation - Simulation Dataverse
Sanchez Rodriguez, Leopoldo, 2018, "simulator METAGENE Fortran code", https://doi.org/10.15454/ELCSZI, Portail Data INRAE, V1
Fortran code of simulator used to generate norms of reaction
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
Feb 3, 2020 - UREP
Martin, Raphael, 2020, "PaSim", https://doi.org/10.15454/WY0LJL, Portail Data INRAE, V1
This dataset contains the files necessary to use PaSim, namely the software and its user guide. IDDN: IDDN.FR.001.220024.000.R.P.2012.000.10000
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