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1 to 10 of 142 Results
Jul 31, 2020
Piffady, Jeremy, 2020, "Biodivers OSCAR project - data for the France Stream macroinvertebrates biodiversity analysis", https://doi.org/10.15454/QY4UVN, Portail Data INRAE, V1
This dataset contains the data that were used in the Biodiversa OSCAR project (Optimising the configuration of woody riparian buffer strips along rivers to enhance biodiversity and ecosystem services) to study the effect of riparian woody buffers percentages on stream macroinvert...
Jul 30, 2020
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a multivoltine herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V1
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a multivoltine herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the t...
Jul 24, 2020 - URGI Plant and Fungi Dataverse
Bernard, Anthony; Dirlewanger, Elisabeth; Delmas, Marine; Barreneche, Teresa, 2018, "INRAE's Walnut Genetic Resources Observation (Historical data 1965-2016)", https://doi.org/10.15454/58SYJV, Portail Data INRAE, V5, UNF:6:UiYp13tH0Wr2/sOrNNBPVw== [fileUNF]
Persian or English walnut (Juglans regia L.), the walnut species cultivated for nut production, is one of the oldest food sources known and is grown worldwide in temperate areas. In this work, historical data have been collected thanks to the team of the late Eric Germain, former...
Jul 23, 2020 - Experimental - Observation - Simulation Dataverse
Poggi, Sylvain; Delaplace, Alexis; Pichelin, Pascal; Le Cointe, Ronan, 2020, "History of land uses over the period 2013-2019 in the Kervidy-Naizin watershed (Brittany, France)", https://doi.org/10.15454/ATYOBO, Portail Data INRAE, V1
The dataset provides the representation of an agricultural landscape located in the Kervidy-Naizin watershed (Brittany, north-western France). Data describe the landscape mosaic (in vector format) and the history of land covers over the period 2013-2019. Part of this landscape be...
Jul 16, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Jul 16, 2020
Bouffartigue, Cathy; Flutre, Timothée, 2020, "Analyses phylogénétiques et clonales de châtaigniers _ Thèse C. Bouffartigue", https://doi.org/10.15454/JA42UU, Portail Data INRAE, V1, UNF:6:/Swh6DCfWDUNue2RpPecNg== [fileUNF]
Analyses microsatellites de châtaigniers cultivés réalisés dans le cadre de la thèse de C. Bouffartigue : analyses clonales et phylogénétiques.
Jul 13, 2020
Lesur Kupin, Isabelle, 2020, "EPITREE project - WGS SNPs Oak", https://doi.org/10.15454/W4XFPF, Portail Data INRAE, V1
In the EPITREE project (https://www6.inrae.fr/epitree-project/Le-projet-EPITREE) we aim at studying the distribution of methylation sites in 10 oak (Q. petraea) genomes. To do so, we had to discriminate between true C/T SNPs and C>T substitutions caused by bisulfite conversion wh...
Jul 6, 2020 - Experimental - Observation - Simulation Dataverse
Perronne, Remi; Jabot, Franck; Pottier, Julien, 2020, "Inter- and intraspecific variability of plant individual growth and its role on species ranking in grasslands", https://doi.org/10.15454/23XAHM, Portail Data INRAE, V1, UNF:6:DLT0qufYGdok5pc6kMArEg== [fileUNF]
Metadata description of: FLORIS_botanical_survey_2017.csv FLORIS_environmental_conditions_2017.csv FLORIS_RGR_individual_level_2017.csv Surveys conducted in 18 temperate permanent grasslands located in the Massif Central, France, from April to July 2017.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Hassanaly-Goulamhoussen, Rahim; Danchin, Eienne, 2020, "Experimental validations of TE-impacted coding or regulatory loci", https://doi.org/10.15454/NQAF31, Portail Data INRAE, V2
Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region surrounding the insertion point, TE frequency values per isolate, experimental design (primers sequences, Tm), ii)...
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