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1 to 10 of 138 Results
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period", https://doi.org/10.15454/5BLYMJ, Portail Data INRAE, V1, UNF:6:zHbwy2kRNYfSFnRYG1y0sw== [fileUNF]
Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and surrounding weeds/wild plants in horticultural contexts in southwestern France. A total of 165 libraries were p...
Jul 12, 2019
Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1
This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...
Jul 25, 2019
Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools", https://doi.org/10.15454/X23KJF, Portail Data INRAE, V1
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from composite samples of wild herbaceous plants in different ecological contexts. In total, 32 libraries were...
Apr 6, 2021
Plaza Onate, Florian; Pons, Nicolas; Gauthier, Franck; Almeida, Mathieu; Ehrlich, Stanislav Dusko; Le Chatelier, Emmanuelle, 2021, "Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/FLANUP, Portail Data INRAE, V1, UNF:6:FWhI4eW+F6Bx/iR6cF7tcA== [fileUNF]
Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC2 catalog with MSPminer. MSPs were used to estimate species abundance and perform functional analysis in the Human Gut Microbiome Atlas For more in...
Jan 5, 2021
Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script", https://doi.org/10.15454/A3QKZI, Portail Data INRAE, V1
See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...
Dec 4, 2020
Boutet, Stephanie; Barreda, Léa; Perreau, François; Mouille, Grégory; Lepiniec, Loïc; Corso, Massimiliano, 2020, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years", https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1
Samples collection: Six different cultivars of camelina were grown at the experimental farm of Bologna University (Italy) located in Cadriano (Bologna, Italy, 44°30′N, 11°23′E, 32 m a.s.l.) during five consecutive years (2015 - 2019). The six tested cultivars were: MIDAS (AAFC, S...
Mar 4, 2020
Auer, Lucas, 2020, "TWS enrichment sequencing data archive", https://doi.org/10.15454/XTIHB5, Portail Data INRAE, V1
Raw sequencing data associated with a paper. Enrichment of a termite-originated bacterial community in bioreactor under anareobic conditions, with wheat straw as sole carbon source. Data produced with an Illumina MiSeq Samples names : (a and b stand for biological replicates) - G...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
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