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Type: (datasets) Subject: Omics Type: (datasets) Author Name: Bouchez, Agnès

1 to 8 of 8 Results

Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018) Aug 10, 2018 Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1 Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
Diat.barcode, an open-access barcode library for diatoms Nov 13, 2020 Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10 Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library Feb 24, 2020 Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1 These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories Feb 24, 2020 Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF] These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline MOTHUR selectionné Mar 5, 2019 Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Jacas, Louis; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2019, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline MOTHUR selectionné", https://doi.org/10.15454/1OTGWL, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF] Le pipeline sélectionné pour produire les listes floristiques utilisées pour calculer les IBD des 447 échantillon est donné ci dessous
A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9 Dec 1, 2020 Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2 Ready to use database adapted from Diat.barcode v9 for MOTHUR
A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2 Mar 5, 2019 - CARRTEL Dataverse Keck, François; Rimet, Frédéric; Vasselon, Valentin; Bouchez, Agnès, 2019, "A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2", https://doi.org/10.15454/HNI1EK, Portail Data INRAE, V1 This database is an adaptation for DADA2 of : Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data Inra, V1 This versio...
A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9 Jan 15, 2021 Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V2 This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...

Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)

Aug 10, 2018

Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1

Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...

Diat.barcode, an open-access barcode library for diatoms

Nov 13, 2020

Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10

Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...

Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library

Feb 24, 2020

Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1

These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...

Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories

Feb 24, 2020

Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]

These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...

Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline MOTHUR selectionné

Mar 5, 2019

Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Jacas, Louis; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2019, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Pipeline MOTHUR selectionné", https://doi.org/10.15454/1OTGWL, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF]

Le pipeline sélectionné pour produire les listes floristiques utilisées pour calculer les IBD des 447 échantillon est donné ci dessous

A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9

Dec 1, 2020

Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2

Ready to use database adapted from Diat.barcode v9 for MOTHUR

A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2

Mar 5, 2019 - CARRTEL Dataverse

Keck, François; Rimet, Frédéric; Vasselon, Valentin; Bouchez, Agnès, 2019, "A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2", https://doi.org/10.15454/HNI1EK, Portail Data INRAE, V1

This database is an adaptation for DADA2 of : Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data Inra, V1 This versio...

A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9

Jan 15, 2021

Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V2

This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...

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