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Oct 19, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Grynberg, Priscila; Danchin, Etienne, 2020, "Gene Ontology enrichment in PPN-specific and horizontally acquired proteins", https://doi.org/10.15454/8NZABA, Portail Data INRAE, V3, UNF:6:yJukDnmw5qngLgeT3hhznw== [fileUNF]
We used a hypergeometric test within the FUNC program (Prüfer et al., 2007) to determine whether certain GO terms assigned via InterproScan annotation were significantly enriched in M. incognita : - PPN-specific proteins - PPN-specific putative secreted proteins (PSP) - PPN-speci...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder results: raw and annotated orthogroups and list of unassigned proteins", https://doi.org/10.15454/ZAYJBC, Portail Data INRAE, V1, UNF:6:8NY/0IDimU6RMU86NxPleg== [fileUNF]
Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is available at https://doi.org/10.15454/IIAQOW Four files are provided and described below: 1- Orthogroups.Ge...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder rooted species tree", https://doi.org/10.15454/MBMOQC, Portail Data INRAE, V1
Rooted phylogenomics species tree performed by Orthofinder on the 63 species, in Newick format. An annotated version of the tree in PDF format, produced with iTOL is also available.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
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