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1 to 10 of 14 Results
May 6, 2021 - Experimental - Observation - Simulation Dataverse
Desbiez-Piat, Arnaud; Dillmann, Christine; Tenaillon, Maud, I., 2021, "Interplay between high drift and high selection in small selfing maize populations : simulator and summary data", https://doi.org/10.15454/JQABMJ, Portail Data INRAE, V1, UNF:6:FkZOmro4EhQgfvnOnfSRww== [fileUNF]
A R script that simulates the evolution of a quantitative trait in Saclay's Divergent Selection Experiments (Saclay's DSEs) breeding schemes, along with a dataset containing summary statistics on the observed response to selection for maize flowering time in Saclay's DSE's
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V2, UNF:6:eKPs0JUt+cT1C/bqgPBVjg== [fileUNF]
This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.p...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V3, UNF:6:E+xGPf2dIik9HjdvU3Bv3A== [fileUNF]
This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and a...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V3
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET c...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V2
This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET con...
Mar 31, 2021
Ay, Jean-Sauveur, 2019, "Classification statistique des vignobles de Côte d'Or", https://doi.org/10.15454/ZZWQMN, Portail Data INRAE, V4
Replicability material for https://doi.org/10.1111/ajae.12100. Les données sont décrites dans un data paper publié dans CyberGeo, le fichier readme.txt est le matériel additionnel associé. See also the code on github (https://github.com/jsay/geoInd) and the app (ttps://cesaer-dat...
Jan 22, 2021 - Chemometrics-Chemhouse
Mallet, Alexandre; Pérémé, Margaud; Charnier, Cyrille; Roger, Jean-Michel; Steyer, Jean-Philippe; Latrille, Eric; Bendoula, Ryad, 2021, "On-site substrate characterization in the anaerobic digestion context: a dataset of near infrared spectra acquired with four different optical systems on freeze-dried and ground organic wastes", https://doi.org/10.15454/SQQTUU, Portail Data INRAE, V1
The near infrared spectra of thirty-three freeze-dried and ground organic waste samples of various biochemical composition were collected on four optical systems, including a laboratory spectrometer (Buchi FT-NIR NirFlex N-500), a transportable spectrometer (ARCoptix FT-NIR Rocke...
Jan 11, 2021
Plancade, Sandra, 2021, "A stochastic process modelling of phyllochron : script and experimental data from the ITEMAIZE project", https://doi.org/10.15454/CUEHO6, Portail Data INRAE, V1, UNF:6:qoCrkWne08EUiI/jSov3ow== [fileUNF]
R script and data to implement the phyllochron model in Plancade et al (2021). See details in Readme.txt.
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to r...
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