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1 to 10 of 44 Results
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder results: raw and annotated orthogroups and list of unassigned proteins", https://doi.org/10.15454/ZAYJBC, Portail Data INRAE, V1, UNF:6:8NY/0IDimU6RMU86NxPleg== [fileUNF]
Raw and annotated Orthofinder results on 61 nematode and 2 tardigrade (used as outgroup) species. The annotated list of species with description of the abbreviated names is available at https://doi.org/10.15454/IIAQOW Four files are provided and described below: 1- Orthogroups.Ge...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita predicted secreted proteins", https://doi.org/10.15454/JCYZDI, Portail Data INRAE, V1
To identify putative secreted proteins in the M. incognita protein set (Blanc-Mathieu et al. 2017), we searched for predicted signal peptides (SP) for secretion using SignalP v4 (Petersen, Brunak, von Heijne, & Nielsen, 2011). This program improves the differentiation between tra...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita candidate effector proteins", https://doi.org/10.15454/CSTXU2, Portail Data INRAE, V1
Accession numbers of M. incognita candidate effectors. These proteins are predicted to be secreted based on the presence of a signal peptide for secretion and absence of transmembrane domains. Furthermore at least one motif known to be enriched in effector proteins is present in...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins", https://doi.org/10.15454/LMY6LV, Portail Data INRAE, V1
MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins M. incognita proteins with at least one of the 4 motifs identified as enriched in the known effector proteins as described in (Vens, Rosso, Danchin, Bioinformatics, 2011)
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "PPN-specific M. incognita proteins with no hits against NR", https://doi.org/10.15454/48436V, Portail Data INRAE, V1
Accession numbers of M. incognita proteins specific to plant-parasitic nematodes as determined by the orthofinder analysis and returning no significant hits against the NCBI's NR according to Diamond.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto, 2020, "Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library", https://doi.org/10.15454/FROF42, Portail Data INRAE, V1
Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available: 1- all the M. incognita proteins as queries 2- PPN-specific M. incognita proteins as queries...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incongnita proteins specific to plant-parasitic nemaotdes", https://doi.org/10.15454/I9MWRS, Portail Data INRAE, V1
Accession numbers of M. incognita predicted proteins having predicted homologs only in other plant-parasitic nematodes (PPN) or being M. incognita-specific.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "Meloidogyne incognita Interproscan annotation", https://doi.org/10.15454/9BFFKG, Portail Data INRAE, V1
Interproscan annotation on the 43,718 predicted proteins in the genome of the root-knot nematode Meloidogyne incognita (Blanc-Mathieu et al. 2017, PLoS Genetics). vesrion used: interproscan-5.29-68.0 options used: -dp Disables use of the precalculated match lookup service = all m...
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