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1 to 10 of 26 Results
Jan 17, 2020 - Vocabulaires Ouverts
Tireau, Anne; Cabrera-Bosquet, Llorenç; Neveu, Pascal, 2018, "Ontology of Experimental Events", https://doi.org/10.15454/APBGKK, Portail Data INRAE, V2
The Ontology of Experimental Events (OEEv), characterises events that occur during an experiment, e.g. dates of sowing, application of a given treatment, harvesting, measurements or sampling for -omic measurements, or any category of technical problem.
Jan 17, 2020 - Vocabulaires Ouverts
Tireau, Anne; Cabrera-Bosquet, Llorenç; Neveu, Pascal, 2018, "Ontology for Experimental Phenotypic Objects", https://doi.org/10.15454/PG4VUH, Portail Data INRAE, V2
The Ontology for Experimental Phenotypic Objects (OEPO), allows assigning types (e.g. Experimental organization and context, Environment type, Germplasm, Physical Object) to objects involved in phenotyping experiments and defining specialization hierarchy between them according t...
Jan 6, 2020 - Vocabulaires Ouverts
Nédellec, Claire; Marcel, Thierry; Sourdille, Pierre, 2018, "Wheat Trait and Phenotype Ontology", https://doi.org/10.15454/1.4382637738008071E12, Portail Data INRAE, V3
Wheat Trait and Phenotype Ontology is an ontology of wheat traits and environmental factors that affect these traits. They include resistance to disease, development nutrition, bread quality, etc. Environmental factors include biotic and abiotic factors.
Apr 26, 2019 - Vocabulaires Ouverts
Bernard, Anthony; Germain, Eric, 2018, "Walnut Trait Ontology", https://doi.org/10.15454/AV5RT2, Portail Data INRAE, V3
This ontology gathers phenotypical traits and variables for walnut evaluation. These traits deal with phenology, in-shell walnut and kernel. They come from Descriptors for walnuts, IPGRI, 1994 or have been adapted or developed by Eric Germain.
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Grimplet, Jérôme; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Rombault, Stéphane; Rustenholtz, Camille; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)", https://doi.org/10.15454/1.5009072354498936E12, Portail Data INRAE, V3
Abstract:The dataset comprises 12X.v2 grapevine reference genome assembly and its VCost.v3 gene annotation in Genbank format. The 12X.v2 chromosome assembly is based on the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera cv....
Nov 23, 2018 - URGI Plant and Fungi Dataverse
Canaguier, Aurélie; Le Paslier, Marie-Christine; Duchêne, Eric; Scalabrin, Simone; Di Gaspero, Gabriele; Mohellibi, Nacer; Choisne, Nathalie; Berard, Aurélie; Chauveau, Aurélie; Le Clainche, Isabelle; Bounon, Remy; Guichard, Cécile; Rustenholtz, Camille; Brunel, Dominique; Morgante, Michele; Quesneville, Hadi; Adam-Blondon, Anne-Françoise, 2018, "Development of a new version of the grapevine reference genome assembly (12X.v2) based on genetic maps and paired-end sequences.", https://doi.org/10.15454/1.4962347083032307E12, Portail Data INRAE, V3
Abstract:The dataset comprises (i) two excel files describing in details the SY x GR, CH x BI and the RI x GW genetic maps and the markers that were used to order and orient the scaffolds of the grapevine reference genome build (FN594950-FN597014, EMBL release 102; Vitis vinifera...
ThaliaDB maize Dataverse(INRA - Institut National de la Recherche Agronomique)
Oct 24, 2018SelGen
This dataverse contains genotyping datasets and files (raw/imputed/nonimputed/filtered/elaborate) and phenotyping datasets (elaborate) useful for diversity analysis, GWAS, Genomics selection, for maize species, obtained in multiple collaborative projects leaded/in partnership by/...
SelGen(www.inra.fr)
Oct 24, 2018Omics Dataverse
Genotyping, GWAS and genomic selection data Données génotypage, GWAS et sélection génomique
Oct 16, 2018 - BioForA Dataverse
Rogier, Odile; Chateigner, Aurélien; Amanzougarene, Souhila; Lesage-Descauses, Marie-Claude; Balzergue, Sandrine; Brunaud, Véronique; Caius, José; Soubigou-Taconnat, Ludivine; Jorge, Véronique; Segura, Vincent, 2018, "Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra", https://doi.org/10.15454/KZOPZB, Portail Data INRAE, V1
This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra"
Oct 4, 2018 - URGI Plant and Fungi Dataverse
Quesneville, Hadi, 2018, "Transposable element annotation of Arabidopsis lyrata subsp. lyrata", https://doi.org/10.15454/INYUVZ, Portail Data INRAE, V1
After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot...
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