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1 to 10 of 17 Results
Sep 14, 2020
Fabre, Frederic, 2018, "An epi-evolutionary model to predict spore-producing pathogens adaptation to quantitative resistance in heterogeneous environments by R. Djidjou-Demasse, J.-B. Burie, A. Ducrot, S. Lion, Q. Richard and F. Fabre", https://doi.org/10.15454/WAEIMA, Portail Data INRAE, V3, UNF:6:VMSNwYEeJZ3ImK9r2Mlkig== [fileUNF]
MATLAB codes for reproducing the simulations and main figures described in Djidjou-Demasse et al. 2020 An epi-evolutionary model to predict spore-producing pathogens adaptation to quantitative resistance in heterogeneous environments (https://www.biorxiv.org/content/10.1101/42346...
Jul 15, 2020 - Experimental - Observation - Simulation Dataverse
Bénard, Camille; Biais, Benoit; Ballias, Patricia; Beauvoit, Bertrand; Bernillon, Stéphane; Cabasson, Cécile; Colombié, Sophie; Deborde, Catherine; Gaillard, Pierre; Génard, Michel; Gibon, Yves; Jacob, Daniel; Maucourt, Mickael; Moing, Annick; Vercambre, Gilles, 2018, "FRIM - Fruit Integrative Modelling", https://doi.org/10.15454/95JUTK, Portail Data INRAE, V5
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemist...
Feb 6, 2020 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara viticola, the grapevine downy mildew pathogen", https://doi.org/10.15454/4NYHD6, Portail Data INRAE, V4
This dataset includes the assembly and annotation of the Plasmopara viticola genome (INRA-PV221 isolate), following genome sequencing using PacBio long reads at deep coverage. The paper describing the genome is now published in Genome Biology and Evolution (doi.org/10.1093/gbe/ev...
Dec 7, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Mazet, Isabelle D.; Couture, Carole; Gouzy, Jérôme; Piron, Marie-Christine; Kuchly, Claire; Bouchez, Olivier; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Data from: A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes", https://doi.org/10.15454/8NZ8X9, Portail Data INRAE, V2
This dataset includes analysis files for the paper "A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes" now available in Genome Biology and Evolution (doi.org/10.1093/gbe/evz048). Archives can contain...
Dec 3, 2018 - Experimental - Observation - Simulation Dataverse
Fournet, Sylvain; Pellan, Lucille; Porte, Catherine; Piriou, Christophe; Grenier, Eric; Montarry, Josselin, 2018, "Replication Data for: Populations of the Beet Cyst Nematode Heterodera schachtii Exhibit Strong Differences in their Life-History Traits Across Changing Thermal Conditions", https://doi.org/10.15454/ZKGTAH, Portail Data INRAE, V1, UNF:6:kGELlMGJlDIZ67eLVrEq/g== [fileUNF]
It is widely accepted that climate has an essential influence on the distribution of species and that temperature is the major abiotic factor that affects their life-history traits. Species with very restricted active dispersal abilities and a wide geographical distribution are t...
Dec 3, 2018 - Experimental - Observation - Simulation Dataverse
Mariette, Nicolas; Kröner, Alexander; Mabon, Romain; Montarry, Josselin; Marquer, Bruno; Corbière, Roselyne; Androdias, Annabelle; Andrivon, Didier, 2018, "Sporangia size and number relationship for Phytophthora infestans isolates", https://doi.org/10.15454/BB0WJN, Portail Data INRAE, V1, UNF:6:n2M9Z7zG1mjhlXER7RDCWQ== [fileUNF]
Phenotypic data (sporangia size and sporangia number) of P. infestans isolates obtained in three infection experiments conducted under controlled conditions.
Nov 8, 2018 - Grapevine Downy Mildew Genomics Dataverse
Dussert, Yann; Couture, Carole; Mazet, Isabelle D.; Gouzy, Jérôme; Piron, Marie-Christine; Rispe, Claude; Mestre, Pere; Delmotte, François, 2018, "Genome assembly and annotation of Plasmopara muralis, the downy mildew pathogen on Parthenocissus tricuspidata and Parthenocissus quinquefolia", https://doi.org/10.15454/Q1QJYK, Portail Data INRAE, V2
This dataset includes the assembly and annotation of the Plasmopara muralis genome (INRA-PM001 isolate). Plasmopara muralis is the causal agent of downy mildew on Parthenocissus tricuspidata and Parthenocissus quinquefolia. The paper describing the genome is now published in Geno...
Oct 19, 2018 - URGI Plant and Fungi Dataverse
URGI, 2018, "Transposable element annotation of Botrytis cinerea B05.10", https://doi.org/10.15454/TFYH9N, Portail Data INRAE, V1
The TEdenovo was launched on Botrytis cinerea strain B05.10 whole genome (18 chromosomes, NCBI bioProject PRJNA264284, assembly ASM83294v1). The TE Consensus library from the TEdenovo (36 consensus) was filtered out for consensus sequences classified as SSR, or noCat built from l...
Aug 3, 2018 - Omics Dataverse
Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1
This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Jul 18, 2018 - Experimental - Observation - Simulation Dataverse
Muneret, Lucile; Mitchell Matthew; Seufert, Verena; Aviron, Stéphanie; Djoudi, El Aziz; Pétillon, Julien; Plantegenest, Manuel; Thiéry, Denis; Rusch, Adrien, 2018, "Evidence that organic farming promotes pest control", https://doi.org/10.15454/DV8LMF, Portail Data INRAE, V1
Data sets used to examine the effect of organic farming on pest control potential and pest infestation levels in agrosystems. The article has been published in July 2018 in Nature Sustainability.
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