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1 to 10 of 26 Results
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period", https://doi.org/10.15454/5BLYMJ, Portail Data INRAE, V1, UNF:6:zHbwy2kRNYfSFnRYG1y0sw== [fileUNF]
Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and surrounding weeds/wild plants in horticultural contexts in southwestern France. A total of 165 libraries were p...
Jul 12, 2019
Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1
This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...
Jul 25, 2019
Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools", https://doi.org/10.15454/X23KJF, Portail Data INRAE, V1
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from composite samples of wild herbaceous plants in different ecological contexts. In total, 32 libraries were...
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum”", https://doi.org/10.15454/RWOLLQ, Portail Data INRAE, V1, UNF:6:Mg1hXDjtGpQzxMfjXWjgyg== [fileUNF]
Supplementary tables to manuscript in Chapter 4
Jul 31, 2019
Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments”", https://doi.org/10.15454/UL0OLW, Portail Data INRAE, V1, UNF:6:DnZgs5I2Yfn5qjpU112fKw== [fileUNF]
Supplementary tables to manuscript in Chapter 3.
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Crop and wild plants/weed species-associated viromes in a horticultural context: diversity, prevalence and stability over a two-year period”", https://doi.org/10.15454/JRB3P4, Portail Data INRAE, V1
Supplementary tables to manuscript in Chapter 1.
Jul 31, 2019
Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses”", https://doi.org/10.15454/OAKDVI, Portail Data INRAE, V1, UNF:6:UoaxapZDJcV5rZNUqGRuqQ== [fileUNF]
Supplementary tables to manuscript in Chapter 2
Jul 2, 2019
Marais Colombel, Armelle, 2019, "Shallots virome", https://doi.org/10.15454/6XCMAE, Portail Data INRAE, V1
In order to elucidate the etiology of a novel disease on shallots in France, double-stranded RNAs from four symptomatic plants and two asymptomatic plants were analyzed using HTS. The disease has been characterized by foliar symptoms consisted of yellow stripes associated with a...
Jun 28, 2019
Delye, Christophe, 2019, "R scripts and training data set for NGS-based resistance diagnosis", https://doi.org/10.15454/BCZF3S, Portail Data INRAE, V1, UNF:6:3whKFdlXAOan99XGTc9SSA== [fileUNF]
R scripts and training data set for NGS-based resistance diagnosis
Nov 21, 2019 - Experimental - Observation - Simulation Dataverse
Fabre, Frederic; Coville, Jérome; Cunniffe, Nik, 2019, "Optimising reactive disease management using spatially explicit models at the landscape scale", https://doi.org/10.15454/JWONRG, Portail Data INRAE, V3
R code associated with the book chapter "Optimising reactive disease management using spatially explicit models at the landscape scale". The R code describes a simple landscape-scale epidemic model to illustrate how dispersal and model structure can affect epidemic dynamics, as w...
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