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1 to 9 of 9 Results
Jan 2, 2020
Lepais, Olivier, 2019, "Automated pipeline for sequence-based microsatellite genotyping", https://doi.org/10.15454/HBXKVA, Portail Data INRAE, V2
Two bash scripts are provided to automated sequence-base microsatellite genotyping from data sequences generated by amplicon sequencing (SSRseq, SSR-GBS or similar approaches as described in Lepais et al. 2019). The first script is used to compare genotype quality generated using...
Oct 31, 2019 - Vocabulaires Ouverts
Buche, Patrice, 2019, "Source codes associated with an aligment method which permits to align food sources using LanguaL as background knowledge", https://doi.org/10.15454/KYZAW5, Portail Data INRAE, V1, UNF:6:ByAyenz+6QfFlhzNB5HuAw== [fileUNF]
This dataset contains source codes associated with an aligment method which permits to align food sources using LanguaL as background knowledge
Sep 17, 2019 - EPGV
Toda, Nicholas, 2019, "NLGenomeSweeper", https://doi.org/10.15454/DS6VIK, Portail Data INRAE, V1
NLGenomeSweeper is a command line bash pipeline that searches a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vini...
Jul 17, 2019
Ay, Jean-Sauveur, 2019, "Classification statistique des vignobles de Côte d'Or", https://doi.org/10.15454/ZZWQMN, Portail Data INRAE, V3
Modélisation statistique des liens entre les attributs naturels des vignobles de Côte-d'Or et la hiérarchie des appellations d'origine contrôlée afin d'estimer un score de qualité pour chaque parcelle et de corriger les effets historiques à l'échelle communale. sur github @ https...
May 22, 2019
Garcia De Cortazar Atauri, Inaki; Maury, Olivier, 2019, "GETARI : Generic Evaluation Tool of AgRoclimatic Indicators", https://doi.org/10.15454/IZUFAP, Portail Data INRAE, V1
GETARI is generic evaluation tool to calculate and study climate suitability of areas for cultivation of specific crops. Crops are very dependent of the climatic effects happening during their cycle and those define climate suitability areas for cultivation. Agroclimatic indicato...
Mar 20, 2019
Robin, Paul; Chetouane, Wejden; Amand, Gérard; Keïta, Alassane; Tavares, Manuel; Nicolas, Christian; Créach, Pauline; Prigent, Jean-Philippe; Pigache, Elodie; M'Hamdi, Naceur; Rousset, Nathalie, 2019, "GestCO2, heat, carbon and water budgets of a broiler batch (ROSS 308): observations and associated modelling equations", https://doi.org/10.15454/FQO7VA, Portail Data INRAE, V1, UNF:6:oSvUAUyZryYgLN4V70anRQ== [fileUNF]
Models of heat production of broilers are used to design the thermal equipment to optimize climate control. The reference models are now around fifteen years old. Daily values of heat productions are deduced from the live weight of broilers and do not integrate the diversity of l...
Feb 11, 2019 - Data-OLA Dataverse
Schellenberger, Antoine; Monet, Ghislaine; Barbet, Denis; Maurice, Damien; Enrico, Guillaume; Fiocca, Amélie, 2019, "Software Architecture of the OLA Observatory Information System for Lake Environmental Research", https://doi.org/10.15454/VBWYWG, Portail Data INRAE, V2
OLA Information system (©SOERE OLA-IS, AnaEE-France, INRA Thonon-les-Bains, developed by Eco-Informatics ORE INRA Team) has been developed to meet data management needs of lake environmental research observatories in order to make data available for scientific communities. Softwa...
Jan 18, 2019 - Experimental - Observation - Simulation Dataverse
Schellenberger, Antoine; Tcherniatinsky, Philippe; Yayende-Guedoka, Vivianne-Judith; Yahiaoui, Rachid; Maurice, Damien; Monet, Ghislaine, 2019, "Software architecture for environnemental research observatories information systems: central component", https://doi.org/10.15454/QJJJZU, Portail Data INRAE, V1
Information systems have been developed to meet data management needs of environmental research observatories in order to make data available for scientific communities. Software architecture of these IS is structured around (i) a central component dedicated to generic functions...
Jan 8, 2019 - Experimental - Observation - Simulation Dataverse
Jullien, Margaux; Navascués, Miguel; Ronfort, Joëlle; Gay, Laurène, 2019, "Code from Structure of multilocus genetic diversity in predominantly selfing populations", https://doi.org/10.15454/VYPXIJ, Portail Data INRAE, V1
We provide here scripts allowing forward simulations of temporal samples in several demographic scenarios using SLiM 2.6, and converting the output into microsatellite data following the stepwise mutation model. The demographic scenarios simulated are: - isolated population of co...
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