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1 to 10 of 66 Results
Dec 4, 2020
Boutet, Stephanie; Barreda, Léa; Perreau, François; Mouille, Grégory; Lepiniec, Loïc; Corso, Massimiliano, 2020, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years", https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1
Samples collection: Six different cultivars of camelina were grown at the experimental farm of Bologna University (Italy) located in Cadriano (Bologna, Italy, 44°30′N, 11°23′E, 32 m a.s.l.) during five consecutive years (2015 - 2019). The six tested cultivars were: MIDAS (AAFC, S...
Mar 4, 2020
Auer, Lucas, 2020, "TWS enrichment sequencing data archive", https://doi.org/10.15454/XTIHB5, Portail Data INRAE, V1
Raw sequencing data associated with a paper. Enrichment of a termite-originated bacterial community in bioreactor under anareobic conditions, with wheat straw as sole carbon source. Data produced with an Illumina MiSeq Samples names : (a and b stand for biological replicates) - G...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
May 18, 2020 - SPOmics
Delannoy, Etienne; Jakalski, Marcin; Caïus, José; May, Michał; Minasiewicz, Julita; Selosse, Marc-André, 2020, "The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming", https://doi.org/10.15454/HR9KUX, Portail Data INRAE, V1, UNF:6:jY13iPp6Ar4xBi23WIDSwA== [fileUNF]
this dataset provides the results of the de novo assembly and annotation of RNA-seq data from the mycoheterotrophic orchids Neottia nidus-avis and Epipogium aphyllum. For each species, a gff file, an annotation file and an expression count table is provided. The raw sequencing da...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto, 2020, "Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library", https://doi.org/10.15454/FROF42, Portail Data INRAE, V1
Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available: 1- all the M. incognita proteins as queries 2- PPN-specific M. incognita proteins as queries...
Aug 7, 2020 - PMB Metabolomics
Deborde, Catherine, 2020, "Sunflower xylem sap NMR-based Metabolomics - Low [Cd] exposition", https://doi.org/10.15454/WEIXCP, Portail Data INRAE, V2, UNF:6:SOmZDpj3dVza5NuskRNxzA== [fileUNF]
1D 1H-NMR metabolomic profiling of xylem sap in two sunflower cultivars exposed to low Cd concentrations in hydroponics.
Sep 9, 2020
Penouilh-Suzette, Charlotte; Blanchet, Nicolas; Bonnafous, Fanny; de Givry, Simon; Dinis, Romain; Brouard, Céline; Duruflé, Harold; Gody, Louise; Grassa, Christopher; Heudelot, Xavier; Laporte, Marion; Mangin, Brigitte; Marage, Gwenola; Mayjonade, Baptiste; Pomiès, Lise; Langlade, Nicolas, 2020, "RNA expression dataset of 384 sunflower hybrids in field condition", https://doi.org/10.15454/HESVA0, Portail Data INRAE, V1, UNF:6:xMjpZQ4qQiTsbFqjJMoTXg== [fileUNF]
This article describes how RNA expression data of 173 genes were produced on 384 sunflower hybrids grown in field conditions. Sunflower hybrids were selected to represent genetic diversity within cultivated sunflower. The RNA was extracted from mature leaves at one time 7 days af...
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