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1 to 10 of 27 Results
Jan 12, 2021
Allart, Roland; Ricci, Benoît; Poggi, Sylvain, 2020, "R package alm : Automated Landscape Mapping", https://doi.org/10.15454/AKQW7Y, Portail Data INRAE, V2
R package 'alm' : R code and associated shiny application dedicated to the automated mapping of landscapes. The package 'alm' allows users to select and combine layers of geographical information (shapefiles) to map the land covers of a specified buffer or set of buffers.
Dec 22, 2020
Dérozier, Sandra; Nicolas, Pierre; Mäder, Ulrike; Guérin, Cyprien, 2020, "Genoscapist", https://doi.org/10.15454/OMDLOD, Portail Data INRAE, V2
Genoscapist is a web-tool generating high-quality images for interactive visualization of hundreds of quantitative profiles along a reference genome together with various annotations.
Dec 17, 2020 - ELDAM
Coste, Gustave; Biard, Yannick; Roux, Philippe; Hélias, Arnaud, 2020, "ELDAM: A Python software for Life Cycle Inventory data management", https://doi.org/10.15454/6EKXJQ, Portail Data INRAE, V1
Source code of ELDAM (ELsa DAta Manager), a software developed in Python to manage Life Cycle Inventory (LCI). The purpose of ELDAM is to allow better LCI documentation, archiving and exchange by providing a user-friendly, spreadsheet based interface and a complete review procedu...
Dec 10, 2020 - Experimental - Observation - Simulation Dataverse
Haug, Benedikt, 2020, "Simulation Code for comparison of uni- and bivariate analysis in mixed cropping experiments", https://doi.org/10.15454/33S25W, Portail Data INRAE, V1, UNF:6:hFfv2zYHlDnBa/66IZEF+A== [fileUNF]
Simulation code for Haug, Benedikt, Monika M. Messmer, Jérôme Enjalbert, Isabelle Goldringer, Emma Forst, Timothée Flutre, Tristan Mary-Huard, and Pierre Hohmann. “Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept”, Manuscript subm...
Dec 10, 2020 - Experimental - Observation - Simulation Dataverse
Haug, Benedikt, 2020, "Simulation Code for comparison of four different experimental designs in mixed cropping experiments", https://doi.org/10.15454/VKKIBU, Portail Data INRAE, V1, UNF:6:hFfv2zYHlDnBa/66IZEF+A== [fileUNF]
Simulation code for Haug, Benedikt, Monika M. Messmer, Jérôme Enjalbert, Isabelle Goldringer, Emma Forst, Timothée Flutre, Tristan Mary-Huard, and Pierre Hohmann. “Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept”, Manuscript subm...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Dec 1, 2020 - Select SNP for Imputation
Herault, Frederic, 2020, "Select SNP for Imputation software", https://doi.org/10.15454/4KVRWY, Portail Data INRAE, V1
Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection of a sub-panel of SNP for the design of a low density genotyping chip. This program, written in Python, allow the selection of SNP subset according to a chosen linkage disequilibrium (r2) threshold on a...
Nov 27, 2020
Andrey, Philippe; Arpòn, Javier, 2020, "Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin: main source code.", https://doi.org/10.15454/UCRGED, Portail Data INRAE, V2
This dataset contains the source code of a program for the statistical spatial analysis of objects patterns from 3D images. An executable version of the program, compiled for Ubuntu 18.04, is also included. The program has been applied to analyze the 3D spatial arrangement of chr...
Oct 12, 2020
Barroso Bergada, Didac, 2020, "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls -- R code", https://doi.org/10.15454/ZWDFJK, Portail Data INRAE, V2, UNF:6:orRB87170pdVwzurwPbM3A== [fileUNF]
R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"
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