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Jan 26, 2021 - Système d'Information
Pichot, Christian; Clastre, Philippe; Fiocca, Amélie; Evtimova, Mariya; Jaillet, Benjamin; Ozcan, Aytac; Benard, Alain; Benedet, Fabrice; Bouvet, Alain; Cailly, Priscilla; Courbet, François; Deleuze, Christine; Ginisty, Christian; Herault, Bruno; Maurice, Damien; Meredieu, Celine; Michotey, Celia; Mirlyaz, Wulfran; Orazio, Christophe; Paillassa, Eric; Perrier, Celine; Plinio Sist; Pozzi, Tiffani; Renaud, Jean-Pierre; Saint-Andre, Laurent; Said, Sonia, 2021, "Documentation Système d'Information IN-SYLVA France", https://doi.org/10.15454/ELXRGY, Portail Data INRAE, V5
Ensemble des documents élaborés dans le cadre du développement du Système d'Information (SI) IN-SYLVA France. Cette publication comporte plusieurs document élaboré au cours du projet. (i) in-sylva_cahier_des_charges: cahier des charges pour le développement du SI (format pdf). (i...
Jan 25, 2021
Bortolami, Giovanni; Farolfi, Elena; Badel, Eric; Burlett, Regis; Cochard, Herve; Ferrer, Nathalie; King, Andrew; Lamarque, Laurent J.; Lecomte, pascal; Marchesseau-Marchal, Marie; Pouzoulet, Jerome; Torres-Ruiz, Jose M.; Trueba, Santiago; Delzon, Sylvain; Gambetta, Gregory A.; Delmas, Chloe E.L., 2021, "Raw data for the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity"", https://doi.org/10.15454/U9KJEW, Portail Data INRAE, V1, UNF:6:KW/8V9BZC7Cm1vdlB67STQ== [fileUNF]
The files contain raw data used in the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity". There are 4 datasets and 4 associated text files describing the variables. The "kskt_data.csv" dataset includes stem specific hydraulic conductivity (ks),...
Jan 15, 2021
Castagneyrol, Bastien; van Halder, Inge; Kadiri, Yasmine; Schillé, Laura; Jactel, Hervé, 2020, "Raw data for the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species"", https://doi.org/10.15454/KMUX39, Portail Data INRAE, V3, UNF:6:t1nSuO9c2LkYU+KuXXPn/Q== [fileUNF]
The file contains raw data used in the paper "Host-mediated, cross-generational intraspecific competition in a herbivore species". `x` and `y` are the position of each box tree in the green house; `Treatment` is the prior herbivory treatment; `Clutch.number` is the total number o...
Jan 13, 2021 - Dispositifs
Novak, Sandra, 2021, "OasYs_AF", https://doi.org/10.15454/SRBXQ9, Portail Data INRAE, V1
Ici sont rassemblées les descriptions des dispositifs agroforestiers de l’expérimentation système OasYs, mise en œuvre à l’Unité Expérimentale Fourrages, Ruminants et Environnement d’INRAE à Lusignan (UE FERLUS). Here are gathered the descriptions of agroforestry experimental plo...
Aug 24, 2020
Stemmelen, Alex, 2020, "Dataset - Insect herbivory on urban trees: Complementary effect of tree neighbours and predation", https://doi.org/10.15454/R4NESA, Portail Data INRAE, V2
This dataset contains the raw csv file of the data used in the paper "Insect herbivory on urban trees: Complementary effect of tree neighbours and predation", a glossary.docx file containing the glossary associated with the dataset and the RMarkdown file with the script and analy...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Global statistics of the orthofinder analysis", https://doi.org/10.15454/ZGUP7N, Portail Data INRAE, V1
General statistics of the orhofinder analysis on the 63 species (including 61 nematodes). Number of orthogroups, of genes in orthogroups etc...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Orthofinder rooted species tree", https://doi.org/10.15454/MBMOQC, Portail Data INRAE, V1
Rooted phylogenomics species tree performed by Orthofinder on the 63 species, in Newick format. An annotated version of the tree in PDF format, produced with iTOL is also available.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne, 2020, "M. incognita candidate effector proteins", https://doi.org/10.15454/CSTXU2, Portail Data INRAE, V1
Accession numbers of M. incognita candidate effectors. These proteins are predicted to be secreted based on the presence of a signal peptide for secretion and absence of transmembrane domains. Furthermore at least one motif known to be enriched in effector proteins is present in...
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