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1 to 10 of 93 Results
Dec 4, 2020
Cordeau, Stephane; Adeux, Guillaume; Meunier, Dominique; Strbik, Florence; Dugué, Francois; Busset, Hugues; Vieren, Eric; Louviot, Gilles; Munier-Jolain, Nicolas, 2020, "Weed density of 7 major weeds in the long-term integrated weed management cropping system experiment of Dijon-Epoisses (2000-2017)", https://doi.org/10.15454/M5P3LM, Portail Data INRAE, V1, UNF:6:FIOniJTB198K+pTcnKeG1A== [fileUNF]
The dataset contains the density (plants/m²) of 7 weed species (Alopecurus myosuroides, Chenopodium album, Solanum nigrum, Polygonum convolvulus, Aethusa cynapium, Galium aparine, Polygonum aviculare) observed in 90 zones (10 fields x 9 sub-plots per field) over 17 years (2000-20...
Feb 10, 2020 - Biogeco Dataverse
Ehrenmann, Francois; Kremer, Antoine; Truffaut, Laura, 2020, "TREEPEACE project website", https://doi.org/10.15454/LU5QHT, Portail Data INRAE, V1
TREEPEACE project website There are widespread concerns that trees, due to their long life-span, are not able to cope with the rapid ongoing climate change. While many studies have so far investigated potential impacts of climate change on forests, much less attention has been gi...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the M. incognita genome", https://doi.org/10.15454/EPTDOS, Portail Data INRAE, V2
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET config...
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "Transposable Elements prediction and annotation in the C. elegans genome", https://doi.org/10.15454/LQCIW0, Portail Data INRAE, V1
Summary: contains all the essential files produced during the TE prediction, annotation, and post-processing in the C. elegans genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configur...
Jun 15, 2020 - Data-OLA Dataverse
Monet, Ghislaine; Barbet, Denis, 2020, "Terms of Use of OLA-IS (Observatory of LAkes - Information System", https://doi.org/10.15454/HHN2GA, Portail Data INRAE, V2
This text, in English, followed by its French version describes the terms of use of the data available in the information system of the lakes observator. The Terms of Use herein apply 1) to the use of data from the Lakes Observatory (OLA) produced and managed by INRAE (laboratory...
Jun 11, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa; Da Rocha, Martine; Danchin, Eienne, 2020, "TE-related genes: annotation, characterisation, and expression.", https://doi.org/10.15454/DLDJVF, Portail Data INRAE, V1, UNF:6:0p5duAh0cUT41dCDh04q9g== [fileUNF]
Summary: contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen....
Jul 3, 2020 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis with PopoolationTE2", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V2
Summary: contains the i) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate, ii) the popoolationTE2 output file containing all the potential TE polymorphisms, iii) the global analysis workflow.
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Rancurel, Corinne; Togawa, Roberto, 2020, "Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library", https://doi.org/10.15454/FROF42, Portail Data INRAE, V1
Taxonomic distribution of M. incognita Diamond hits against the NCBI's nr library. The taxonomy has been determined by Diamond LCA algorithm via outformat 102. Two reports are available: 1- all the M. incognita proteins as queries 2- PPN-specific M. incognita proteins as queries...
Dec 17, 2020
Lefrançois, Estelle; Blancher, Philippe; Rimet, Frédéric; Bouchez, Agnès, 2020, "Strategy for Successful Integration of eDNA-based Methods in Aquatic Monitoring", https://doi.org/10.15454/29LFIW, Portail Data INRAE, V2
Recent developments in the use of environmental DNA are opening up new horizons for the assessment of the quality of aquatic environments. These rapid and cost-effective methods make it possible to identify all the taxa present in an environmental sample (water or biota). The pro...
Nov 25, 2020 - AMAP ECOPICS
Weemstra, Monique, 2020, "Species-level root trait data (ECOPICS)", https://doi.org/10.15454/J1QDPM, Portail Data INRAE, V1, UNF:6:WkfDduSRJfMlpZtFuN9TiQ== [fileUNF]
Species-level root trait data
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