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1 to 10 of 44 Results
Nov 20, 2020
Tarnaud, Florian, 2020, "A comparative study of Propionibacterium freudenreichii adaptation to cow milk versus soymilk environments reveals major impacts on propionibacterial physiology", https://doi.org/10.15454/G6NGSZ, Portail Data INRAE, V1
Propionibacterium freudenreichii adaptation to cow milk versus soymilk environments was studied thanks to proteomics. Bacteria were harvested at the begining of stationary phase. Protein trypsin digestion were performed in solution. The data set contains 19 files of NanoLC-MS/MS...
Nov 13, 2020
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Nov 6, 2020
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V1
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
Oct 12, 2020
Barroso Bergada, Didac, 2020, "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls -- R code", https://doi.org/10.15454/ZWDFJK, Portail Data INRAE, V2, UNF:6:orRB87170pdVwzurwPbM3A== [fileUNF]
R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"
Sep 22, 2020
Jardin, Julien, 2020, "Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V2
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surfac...
Jul 16, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V1, UNF:6:AbAHJCHSVEP+kwY2z9TN7A== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Jul 7, 2020
Ma, Yuxin, 2020, "Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations", https://doi.org/10.15454/JQPBOW, Portail Data INRAE, V2, UNF:6:+Ms4XeqLMk3Aqhstq1K0Wg== [fileUNF]
This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf-associated fungal communities of wild plant populations (Ma et al. Leaf-associated fungal and viral communities of wild plant populations differ between cultivated and natural ecosystems. Su...
Jun 19, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "QTL mapping for aggressiveness variation in F. graminearum revealed one causal mutation in FgVe1 velvet protein", https://doi.org/10.15454/IRKFHM, Portail Data INRAE, V3, UNF:6:qUH16O3A8fgmJb269Xa6Tw== [fileUNF]
Fusarium graminearum is one of the most frequent causal agent of the Fusarium Head Blight in the world, a cereal disease spread throughout the world, reducing grain production and quality. F. graminearum isolates are genetically and phenotypically highly diverse. Notably, remarka...
May 29, 2020
Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1
Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...
May 12, 2020
Rocha Tartaglia, Natayme, 2020, "Extracellular vesicles produced by human and animal Staphylococcus aureus strains share a highly conserved core proteome", https://doi.org/10.15454/SMFFWK, Portail Data INRAE, V1
The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to proteomics. EVs were purified from supernatants of early stationary S. aureus cultures by a sucrose density grad...
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