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1 to 9 of 9 Results
Dec 1, 2020
Chonova, Teofana; Vasselon, Valentin; Bouchez, Agnès; Rimet, Frédéric, 2020, "A ready-to-use database for mothur: Diat.barcode_rbcL_263bp_mothur based on Diat.barcode v9", https://doi.org/10.15454/SOMFSU, Portail Data INRAE, V2
Ready to use database adapted from Diat.barcode v9 for MOTHUR
Nov 13, 2020
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Nov 5, 2020
Lefrançois, Estelle; Blancher, Philippe; Rimet, Frédéric; Bouchez, Agnès, 2020, "Strategy for Successful Integration of eDNA-based Methods in Aquatic Monitoring", https://doi.org/10.15454/29LFIW, Portail Data INRAE, V1
Recent developments in the use of environmental DNA are opening up new horizons for the assessment of the quality of aquatic environments. These rapid and cost-effective methods make it possible to identify all the taxa present in an environmental sample (water or biota). The pro...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
Sep 25, 2019
Rimet, Frédéric; Tapolczai, Kalman; Vasselon, Valentin; Mary, Nathalie; Bouchez, Agnès, 2019, "Mayotte rivers: databases used for the development of diatom and macroinvertebrates water quality tools.", https://doi.org/10.15454/6Z5IAH, Portail Data INRAE, V1, UNF:6:ONruidDb0OPOqJ6sI38KPQ== [fileUNF]
Données ayant servi au projet "Développement d’outils de bio-indication «phytobenthos» et «macro-invertébrés benthiques» pour les eaux de surface continentales de Mayotte". Ce projet a été financé par l'AFB, Agence Française pour la Biodiversité Les correspondants AFB: Olivier MO...
Dec 4, 2018
Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Guéguen, Julie; Bouchez, Agnès; Rimet, Frédéric, 2018, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Données brutes Fastq 2016 + 2017, Test des différentes stratégies bioinfo sur données 2016. Projet AFB numéro 15000239 / A30.", https://doi.org/10.15454/9EG5Z4, Portail Data INRAE, V1, UNF:6:ajEMExtsrc4xeT8GdJzfgQ== [fileUNF]
Fichiers fastq rassemble tous les fichier fastq des échantillons de 2016 et 2017 Ils sont numérotés de 1.fastq à 464.fastq La correspondance avec les échantillons est donné dans le fichier Suivi_Mothur_Run_Dreal_2016_2017.xlsx Test des différentes stratégies bioinfo - data 2016.z...
Aug 10, 2018
Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1
Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
Jul 12, 2018
Rimet, Frédéric; Chardon, Cécile; Lainé, Leslie; Bouchez, Agnès; Domaizon, Isabelle; Guillard, Jean; Jacquet, Stéphan, 2018, "Thonon Culture Collection -TCC- a freshwater microalgae collection", https://doi.org/10.15454/UQEMVW, Portail Data INRAE, V1
The main objectives of the TCC are to maintain cultures and uncultured samples of freshwater microalgae and to ensure their availability for : - Research projects (research scientists, PhD students). - Development projects (industrial companies). - Practical work in education. -...
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