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1 to 10 of 25 Results
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Nov 13, 2020
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Oct 12, 2020
Barroso Bergada, Didac, 2020, "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls -- R code", https://doi.org/10.15454/ZWDFJK, Portail Data INRAE, V2, UNF:6:orRB87170pdVwzurwPbM3A== [fileUNF]
R code used to perform the network inference and analysis of "Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls"
Oct 5, 2020
Barthe, Manon, 2020, "Raw data for "Phenotypic heterogeneity can be triggered by the molecular switch XylR during Escherichia coli adaptation from glucose to xylose" paper", https://doi.org/10.15454/XWCMZE, Portail Data INRAE, V1
Zip archive including : - files Data Fig1.xlsx ... Data Fig5.xlsx which contain data used for figures 1 to 5 of the paper - directory CytoFile which contains raw cytometric data of figures 4
May 5, 2020
Montarry, Josselin, 2020, "Hatching-data_Gautier-et-al_FIM", https://doi.org/10.15454/THNCAC, Portail Data INRAE, V1, UNF:6:Qx5HAPMFz/q1+QdYIuPKWA== [fileUNF]
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control).
Apr 1, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "A richer community of Botryosphaeriaceae within a less diverse community of fungal endophytes in grapevines than in adjacent forest trees revealed by a mixed metabarcoding strategy.", https://doi.org/10.15454/JEOT4O, Portail Data INRAE, V1, UNF:6:iSW/6jVVjeRvjMhu7p/7iw== [fileUNF]
Botryosphaeriaceae are a diverse group of endophytic fungi colonizing the inner tissue of many woody species. As opportunist pathogens, they have been increasingly involved in diebacks worldwide. Nonetheless, the diversity of Botryosphaeriaceae, especially in asymptomatic plants,...
Mar 4, 2020 - Experimental - Observation - Simulation Dataverse
Abis, Letizia, 2020, "Données de réplication pour : Reduced microbial diversity induces larger volatile organic compound emissions from soils.", https://doi.org/10.15454/4W9DM2, Portail Data INRAE, V1, UNF:6:kjKCJKnf6fCf/yhI93KW8w== [fileUNF]
These data concern the study "Reduced microbial diversity induces larger volatile organic compound emissions from soils". It is our intention to publish all the raw data and the data filtered during the statistical analysis in order to make them available for any further study. T...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
Feb 18, 2020 - Omics Dataverse
Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]
R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
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