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1 to 10 of 30 Results
Apr 13, 2021 - Experimental - Observation - Simulation Dataverse
Mailleret, Ludovic, 2021, "Data associated with "Food and habitat supplementation promotes predatory mites and enhances pest control" by Etienne L., Bresch C., van Oudenhove L. and Mailleret L. To appear in "Biological Control"", https://doi.org/10.15454/0AFUU9, Portail Data INRAE, V1, UNF:6:rroRyCCs2qDTTQ0hchZmbA== [fileUNF]
This dataset gathers the raw results of four experiments performed on the predatory mite Neoseiulus cucumeris, with different kinds of supplementations, in laboratory (two experiments, BAF and BSP1) and greenhouse (two experiments, BSP2 and Biocontrol) settings. The second greenh...
Apr 10, 2021 - Transposons mobility in M. incognita
Kozlowski, Djampa, 2020, "TE polymorphisms detection and analysis", https://doi.org/10.15454/EWJCT8, Portail Data INRAE, V3, UNF:6:E+xGPf2dIik9HjdvU3Bv3A== [fileUNF]
This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and a...
Feb 16, 2021 - URGI Plant and Fungi Dataverse
Michotey, Celia, 2021, "Plant Bioinformatics Facility data management plan", https://doi.org/10.15454/9HM5UI, Portail Data INRAE, V1
Data management plan of the Plant Bioinformatics Facility, hosted at URGI. Copyrights The creator(s) of this plan accept(s) that all or part of the text may be reused and personalized if necessary for another plan. You can cite this plan’s DOI as the source, but the use of any up...
Feb 9, 2021 - Omics Dataverse
Vacher, Corinne, 2021, "Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/PL3HWQ, Portail Data INRAE, V1
This archive provides the statistical analysis scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvi...
Feb 3, 2021
Vacher, Corinne, 2021, "Bioinformatic scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)", https://doi.org/10.15454/KMAU1G, Portail Data INRAE, V1, UNF:6:O96E7S960CaSgbyN7MInuA== [fileUNF]
This archive provides the bioinformatic scripts used to analyze a metabarcoding dataset (available at https://www.ncbi.nlm.nih.gov/bioproject/678415) representing foliar fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)...
Jan 27, 2021 - Experimental - Observation - Simulation Dataverse
Mistral, Pascale; Vanlerberghe-Masutti, Flavie; Elbelt, Sonia; Boissot, Nathalie, 2021, "Aphis gossypii/Aphis frangulae collected worldwide: Microsatellite markers data and genetic cluster assignment", https://doi.org/10.15454/HNGGMX, Portail Data INRAE, V1, UNF:6:1Pw9QXTzG/jc5P/fgSXuAQ== [fileUNF]
The dataset gathers information on 16016 individuals Aphis gossypii/Aphis frangulae collected in 17 countries from 1989 to 2019 from all continents. Aphids collected were either apterous (10177), winged (5654) or eggs (15). They were collected on 19 plant families or in traps dep...
Jan 25, 2021
Bortolami, Giovanni; Farolfi, Elena; Badel, Eric; Burlett, Regis; Cochard, Herve; Ferrer, Nathalie; King, Andrew; Lamarque, Laurent J.; Lecomte, pascal; Marchesseau-Marchal, Marie; Pouzoulet, Jerome; Torres-Ruiz, Jose M.; Trueba, Santiago; Delzon, Sylvain; Gambetta, Gregory A.; Delmas, Chloe E.L., 2021, "Raw data for the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity"", https://doi.org/10.15454/U9KJEW, Portail Data INRAE, V1, UNF:6:KW/8V9BZC7Cm1vdlB67STQ== [fileUNF]
The files contain raw data used in the paper "Seasonal and long-term consequences of esca on grapevine stem xylem integrity". There are 4 datasets and 4 associated text files describing the variables. The "kskt_data.csv" dataset includes stem specific hydraulic conductivity (ks),...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to r...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]
Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA
Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1
Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
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