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1 to 10 of 53 Results
Jan 15, 2021
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V2
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
Jan 8, 2021 - Metabolomic responses of maize leaf to progressive controlled chilling
Urrutia, Maria; Bernillon, Stéphane; Moing, Annick, 2020, "LC-MS metabolomic analyses of maize young leaf cultivated in a growth chamber", https://doi.org/10.15454/J9KO72, Portail Data INRAE, V2, UNF:6:HTEu5gdg6G3uO2MDAMHGWQ== [fileUNF]
Analyses performed on 18 genetically-diverse hybrids using leaf methanolic extracts.
Dec 21, 2020
Plaza Oñate, Florian; Le Chatelier, Emmanuelle, 2020, "Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/QVCYRB, Portail Data INRAE, V1, UNF:6:SHslgNFGrMNfkIbfGdqHpw== [fileUNF]
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as the one published with the original paper except we updated the taxonomic annotation and phylogeny.
Dec 10, 2020
Maillet, Aurelien; Bouju-Albert, Agnès; Roblin, Steven; Vaissié, Pauline; Leuillet, Sébastien; Xavier, Dousset; Jaffrès, Emmanuel; Combrisson, Jérôme; Prévost, Hervé, 2020, "Replication data for : Impact of DNA extraction and sampling methods on bacterial communities monitored by 16S rDNA metabarcoding in cold-smoked salmon and processing plant surfaces", https://doi.org/10.15454/34LLGN, Portail Data INRAE, V1, UNF:6:Y4M66Nm6dM6RkbbWiFEqzw== [fileUNF]
Information data on the diversity of bacterial communities present on 12 samples of cold smoked salmon, 18 samples of stainless steal coupons placed in a food processing environment and 115 samples of stainless steal and tri-polyurethane coupons placed in a food processing enviro...
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 4, 2020
Boutet, Stephanie; Barreda, Léa; Perreau, François; Mouille, Grégory; Lepiniec, Loïc; Corso, Massimiliano, 2020, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years", https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1
Samples collection: Six different cultivars of camelina were grown at the experimental farm of Bologna University (Italy) located in Cadriano (Bologna, Italy, 44°30′N, 11°23′E, 32 m a.s.l.) during five consecutive years (2015 - 2019). The six tested cultivars were: MIDAS (AAFC, S...
Nov 17, 2020 - PEGASE
GONDRET, Florence, 2020, "FeedOmics project - learning and validation databases for blood", https://doi.org/10.15454/J4XOPD, Portail Data INRAE, V1, UNF:6:LEYk5zT2OraDfSVIubV0Dw== [fileUNF]
The FeedOmics project aimed to determine biomarkers of feed efficiency in growing pigs. Here, the files refer to learning and validation databases including transcriptomes of blood from pigs of three different experiments, their class of residual feed intake (RFI+/-) and values f...
Oct 14, 2020
Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome", https://doi.org/10.15454/C3XH6H, Portail Data INRAE, V1
Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...
Oct 6, 2020
Jardin, Julien, 2020, "Data from "Brush border peptidase activity and intestinal transepithelial passage of oligopeptides from a whey protein hydrolysate in Ussing Chamber ex-vivo assays"", https://doi.org/10.15454/AIYGXO, Portail Data INRAE, V1
For many years it was believed that only amino acids, dipeptides and tripeptides could be absorbed and reach the bloodstream. Nowadays, the bioavailability of oligopeptides is also being considered, requiring further research. Hence, in this pilot study, the activity of the brush...
Sep 22, 2020
Jardin, Julien, 2020, "Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V2
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surfac...
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