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1 to 10 of 18 Results
Jan 15, 2021
Chonova, Teofana; Keck, Francois; Bouchez, Agnès; Rimet, Frederic, 2020, "A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v9", https://doi.org/10.15454/QBLSXP, Portail Data INRAE, V2
This database is an adaptation for DADA2 of Diat.barcode v9. Length of sequences is 263 bp ------------------------- Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, Davi...
Dec 21, 2020
Plaza Oñate, Florian; Le Chatelier, Emmanuelle, 2020, "Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota", https://doi.org/10.15454/QVCYRB, Portail Data INRAE, V1, UNF:6:SHslgNFGrMNfkIbfGdqHpw== [fileUNF]
Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota built by binning co-abundant genes of the IGC catalog with MSPminer. This dataset is the same as the one published with the original paper except we updated the taxonomic annotation and phylogeny.
Dec 10, 2020
Maillet, Aurelien; Bouju-Albert, Agnès; Roblin, Steven; Vaissié, Pauline; Leuillet, Sébastien; Xavier, Dousset; Jaffrès, Emmanuel; Combrisson, Jérôme; Prévost, Hervé, 2020, "Replication data for : Impact of DNA extraction and sampling methods on bacterial communities monitored by 16S rDNA metabarcoding in cold-smoked salmon and processing plant surfaces", https://doi.org/10.15454/34LLGN, Portail Data INRAE, V1, UNF:6:Y4M66Nm6dM6RkbbWiFEqzw== [fileUNF]
Information data on the diversity of bacterial communities present on 12 samples of cold smoked salmon, 18 samples of stainless steal coupons placed in a food processing environment and 115 samples of stainless steal and tri-polyurethane coupons placed in a food processing enviro...
Nov 13, 2020
Rimet, Frederic; Chonova, Teofana; Gassiole, Gilles; Gusev, Evgenuy; Kahlert, Maria; Keck, François; Kelly, Martyn; Kulikovskiy, Maxim; Maltsev, Yevhen; Mann, David; Pfannkuchen, Martin; Trobajo, Rosa; Vasselon, Valentin; Wetzel, Carlos; Zimmermann, Jonas; Bouchez, Agnès, 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ, Portail Data INRAE, V10
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton and which make a major contribution to the productivity of oceans and freshwaters. They display a huge diversity, which makes them excellent ecological indicators of aquatic ecosystems, and...
Sep 22, 2020
Jardin, Julien, 2020, "Environmental conditions modulate the protein content and immunomodulatory activity of extracellular vesicles produced by the probiotic Propionibacterium freudenreichii CIRM-BIA129", https://doi.org/10.15454/Q6PPXY, Portail Data INRAE, V2
Propionibacterium freudenreichii is a probiotic Gram-positive bacterium with promising immunomodulatory properties. It modulates regulatory cytokines, mitigates the inflammatory response in vitro and in vivo. These properties were initially attributed to specific bacterial surfac...
Jun 19, 2020 - Experimental - Observation - Simulation Dataverse
Laurent, Benoit, 2020, "QTL mapping for aggressiveness variation in F. graminearum revealed one causal mutation in FgVe1 velvet protein", https://doi.org/10.15454/IRKFHM, Portail Data INRAE, V3, UNF:6:qUH16O3A8fgmJb269Xa6Tw== [fileUNF]
Fusarium graminearum is one of the most frequent causal agent of the Fusarium Head Blight in the world, a cereal disease spread throughout the world, reducing grain production and quality. F. graminearum isolates are genetically and phenotypically highly diverse. Notably, remarka...
May 12, 2020
Rocha Tartaglia, Natayme, 2020, "Extracellular vesicles produced by human and animal Staphylococcus aureus strains share a highly conserved core proteome", https://doi.org/10.15454/SMFFWK, Portail Data INRAE, V1
The Extracellular Vesicle (EV) proteomes of five Staphylococcus aureus (S. aureus) strains originating from human, bovine, and ovine hosts were characterised thanks to proteomics. EVs were purified from supernatants of early stationary S. aureus cultures by a sucrose density grad...
May 5, 2020
Montarry, Josselin, 2020, "Hatching-data_Gautier-et-al_FIM", https://doi.org/10.15454/THNCAC, Portail Data INRAE, V1, UNF:6:Qx5HAPMFz/q1+QdYIuPKWA== [fileUNF]
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control).
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; Mary, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” - raw MiSeq data, inventories", https://doi.org/10.15454/SXKA8I, Portail Data INRAE, V2, UNF:6:qkDWkBPhUOQHwccJmQL5Ng== [fileUNF]
These data supplement the article “Aquatic biofilms as passive environmental DNA samplers: application to benthic macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to “Molecular...
Feb 24, 2020
Rivera, Sinziana; Vasselon, Valentin; May, Nathalie; Monnier, Olivier; Rimet, Frédéric; Bouchez, Agnès, 2020, "Data supplementing the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” - Macroinvertebrate reference library", https://doi.org/10.15454/UNUFWY, Portail Data INRAE, V1
These data supplement the article “Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: test on macroinvertebrate communities in rivers” Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet & Agnès Bouchez submitted to...
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