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Type: (datasets) Subject: Plant Health and Pathology Type: (datasets) Subject: Farming Systems and Practices Type: (datasets) Subject: Microorganisms

1 to 7 of 7 Results

OasYs_AF Jan 13, 2021 - Dispositifs Novak, Sandra, 2021, "OasYs_AF", https://doi.org/10.15454/SRBXQ9, Portail Data INRAE, V1 Ici sont rassemblées les descriptions des dispositifs agroforestiers de l’expérimentation système OasYs, mise en œuvre à l’Unité Expérimentale Fourrages, Ruminants et Environnement d’INRAE à Lusignan (UE FERLUS). Here are gathered the descriptions of agroforestry experimental plo...
R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining Feb 18, 2020 - Omics Dataverse Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF] R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.
DNA metabarcoding of foliar fungal communities in an untreated vineyard Feb 18, 2020 - Omics Dataverse Vacher, Corinne, 2020, "DNA metabarcoding of foliar fungal communities in an untreated vineyard", https://doi.org/10.15454/A24N4C, Portail Data INRAE, V1 This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20-days old leaves in an untreated vineyard located in INRA Vilenave d'Ornon (France). The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pai...
Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards Jul 30, 2019 - Omics Dataverse Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF] This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...
Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota May 9, 2019 - Omics Dataverse Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1 These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...
DNA metabarcoding of foliar fungal communities in conventional and organic vineyards May 7, 2019 - Omics Dataverse Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "DNA metabarcoding of foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/3DPFNJ, Portail Data INRAE, V1 This sequence dataset (FASTQ format) was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platfor...
Annotation data about Multi Criteria Assessment Methods used in the agri-food research : the French National Institute for Agricultural Research (INRA) experience Mar 8, 2019 - Multi Criteria Assessment Methods Gésan-Guiziou, Geneviève; Alaphilippe, Aude; Andro, Mathieu; Aubin, Joël; Bockstaller, Christian; Botreau, Raphaëlle; Buche, Patrice; Collet, Catherine; Darmon, Nicole; Delabuis, Monique; Girard, Agnès; Grateau, Régis; Kansou, Kamal; Martinet, Vincent; Membré, Jeanne-Marie; Sabbadin, Régis; Soler, Louis-Georges; Thiollet-Scholtus, Marie; Tonda, Alberto; Van-Der-Werf, Hayo, 2019, "Annotation data about Multi Criteria Assessment Methods used in the agri-food research : the French National Institute for Agricultural Research (INRA) experience", https://doi.org/10.15454/WB51LL, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF] This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers.

OasYs_AF

Jan 13, 2021 - Dispositifs

Novak, Sandra, 2021, "OasYs_AF", https://doi.org/10.15454/SRBXQ9, Portail Data INRAE, V1

Ici sont rassemblées les descriptions des dispositifs agroforestiers de l’expérimentation système OasYs, mise en œuvre à l’Unité Expérimentale Fourrages, Ruminants et Environnement d’INRAE à Lusignan (UE FERLUS). Here are gathered the descriptions of agroforestry experimental plo...

R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining

Feb 18, 2020 - Omics Dataverse

Vacher, Corinne, 2020, "R scripts used to infer microbial networks from metabarcoding data and validate them using text-mining", https://doi.org/10.15454/5WD6P6, Portail Data INRAE, V1, UNF:6:LNjhKptvEnA9T2eqRWfBNQ== [fileUNF]

R scripts and datafiles used to infer microbial association networks from metabarcoding data of grapevine foliar samples infected or not by powdery mildew (Erysiphe necator). R script used to search for microbial associations in the Scopus database.

DNA metabarcoding of foliar fungal communities in an untreated vineyard

Feb 18, 2020 - Omics Dataverse

Vacher, Corinne, 2020, "DNA metabarcoding of foliar fungal communities in an untreated vineyard", https://doi.org/10.15454/A24N4C, Portail Data INRAE, V1

This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20-days old leaves in an untreated vineyard located in INRA Vilenave d'Ornon (France). The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pai...

Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards

Jul 30, 2019 - Omics Dataverse

Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/WOICSE, Portail Data INRAE, V1, UNF:6:PSwFBpb4Vxgr5rwUlkcPUQ== [fileUNF]

This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ) to the sequences available a...

Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota

May 9, 2019 - Omics Dataverse

Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota", https://doi.org/10.15454/NSHUAQ, Portail Data INRAE, V1

These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/3DPFNJ. They are based on several softwares, including SparCC (Friedman and Alm 2012) and DADA2 (Callahan et al. 2016). The code corresponds to R and R markdown files. These scripts w...

DNA metabarcoding of foliar fungal communities in conventional and organic vineyards

May 7, 2019 - Omics Dataverse

Pauvert, Charlie; Vallance, Jessica; Delière, Laurent; Buée, Marc; Vacher, Corinne, 2019, "DNA metabarcoding of foliar fungal communities in conventional and organic vineyards", https://doi.org/10.15454/3DPFNJ, Portail Data INRAE, V1

This sequence dataset (FASTQ format) was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platfor...

Annotation data about Multi Criteria Assessment Methods used in the agri-food research : the French National Institute for Agricultural Research (INRA) experience

Mar 8, 2019 - Multi Criteria Assessment Methods

Gésan-Guiziou, Geneviève; Alaphilippe, Aude; Andro, Mathieu; Aubin, Joël; Bockstaller, Christian; Botreau, Raphaëlle; Buche, Patrice; Collet, Catherine; Darmon, Nicole; Delabuis, Monique; Girard, Agnès; Grateau, Régis; Kansou, Kamal; Martinet, Vincent; Membré, Jeanne-Marie; Sabbadin, Régis; Soler, Louis-Georges; Thiollet-Scholtus, Marie; Tonda, Alberto; Van-Der-Werf, Hayo, 2019, "Annotation data about Multi Criteria Assessment Methods used in the agri-food research : the French National Institute for Agricultural Research (INRA) experience", https://doi.org/10.15454/WB51LL, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]

This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers.

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