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1 to 4 of 4 Results
Dec 8, 2020 - ThaliaDB maize Dataverse
Nicolas, Stéphane; Madur, Delphine; Charcosset, Alain; Bauland, Cyril; Combes, Valérie; Berard, Aurélie; Arca, Mariangela; Mary-Huard, Tristan; Le Paslier, Marie-Christine; Gouesnard, Brigitte, 2020, "Fluorescence intensity datasets and R scripts to predict allelic frequencies in DNA bulks using maize 50K Illumina array", https://doi.org/10.15454/GANJ7J, Portail Data INRAE, V1, UNF:6:IvZiMGs4Oo8oWZqgBbcDdA== [fileUNF]
R scripts and fluorescence intensity datasets of 24 controlled pools and 327 inbred lines panels extracted from 50K Illumina Infinium HD array (Ganal et al., 2010). These datasets and R scripts can be used to calibrate a model to predict allelic frequencies in new DNA bulks using...
Dec 7, 2020 - Omics Dataverse
Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne, 2020, "Bioinformatic and statistical scripts to analyze metabarcoding data of fungal communities", https://doi.org/10.15454/0CNFWS, Portail Data INRAE, V3, UNF:6:+ROFl+GYxv+1vFHcrzj8MA== [fileUNF]
This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al., Maternal effects shape seed fungal communities in Quercus petraea. Submitted). The bioinformatic script was applied to raw sequences after paired-end sequences were j...
Oct 13, 2020 - Experimental - Observation - Simulation Dataverse
Vandeputte, Marc; Clota, Frédéric; Sadoul, Bastien; Blanc, Marie-Odile; Blondeau-Bidet, Eva; Bégout, Marie-Laure; Cousin, Xavier; Geffroy, Benjamin, 2020, "Data for: Low temperature has opposite effects on sex determination in a marine fish at the larval/post-larval and juvenile stage", https://doi.org/10.15454/QSMRMX, Portail Data INRAE, V1, UNF:6:m8Y0FKwvLlvABQLtFvrTVg== [fileUNF]
This dataset contents: A) biometric and sex data on European sea bass juveniles submitted to 16 different temperature regimes. B) a R workflow (.rmd) to analyze the data in (A) C) gene expression data for ten genes including cyp19a1a and gsdf in fish from 4 of the temperature gro...
Mar 4, 2020 - Experimental - Observation - Simulation Dataverse
Piry, Sylvain, 2020, "Données de réplication pour : Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa)", https://doi.org/10.15454/NBNSHH, Portail Data INRAE, V1, UNF:6:cpQPAtMbNjDfRmRRgKushw== [fileUNF]
Along with these data, the script MusDakar.r is a template provided as supplementary material of the following article: Claire Stragier, Sylvain Piry, Anne Loiseau, Mamadou Kane, Aliou Sow, Youssoupha Niang, Mamoudou Diallo, Arame Ndiaye, Philippe Gauthier, Marion Borderon, Laure...
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