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Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30. Dec 4, 2018 Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Jacas, Louis; Guéguen, Julie; Bouchez, Agnès; Rimet, Frederic, 2018, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30.", https://doi.org/10.15454/WNI6FQ, Portail Data INRAE, V1 Description des 3 fichiers excels : DREAL 2016_2017 liste taxonomique microscopie_moleculaire.xlsx : Fichier excel donnant les listes floristiques diatomées des campagnes 2016 et 2017 obtenues. 3 onglets : - "Microscopie" : listes obtenues en microscopie optique -"Moleculaire" :...
Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018) Aug 10, 2018 Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1 Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...
DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils. Aug 3, 2018 - Omics Dataverse Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1 This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...
Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor - raw sequencing reads Jun 25, 2018 Auer, Lucas, 2018, "Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor - raw sequencing reads", https://doi.org/10.15454/E6YRKX, Portail Data INRAE, V1 Raw Illumina MiSeq sequencing reads (paired) for Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor. Names used correspond the publication. 5 insects were used for screening : Beetle, Chafer, Cockroach, Cricket and...

Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30.

Dec 4, 2018

Rivera, Sinziana; Vasselon, Valentin; Chardon, Cécile; Jacas, Louis; Guéguen, Julie; Bouchez, Agnès; Rimet, Frederic, 2018, "Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30.", https://doi.org/10.15454/WNI6FQ, Portail Data INRAE, V1

Description des 3 fichiers excels : DREAL 2016_2017 liste taxonomique microscopie_moleculaire.xlsx : Fichier excel donnant les listes floristiques diatomées des campagnes 2016 et 2017 obtenues. 3 onglets : - "Microscopie" : listes obtenues en microscopie optique -"Moleculaire" :...

Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)

Aug 10, 2018

Vasselon, Valentin; Rimet, Frederic; Bouchez, Agnès, 2018, "Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail Data INRAE, V1

Method followed to obtain the Rsyst::diatom_rbcl_align_312bp database: 1/ Extraction of the 312bp rbcL barcode from the full Rsyst::diatom database rbcL alignment (using Diat_rbcL_108F and R3 primers). 2/ Sequences with ambiguities (N), homopolymers > 8 and length < 312bp are rem...

DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.

Aug 3, 2018 - Omics Dataverse

Pauvert, Charlie; Buée, Marc; Laval, Valérie; Edel-Hermann, Véronique; Fauchery, Laure; Gautier, Angélique; Lesur Kupin, Isabelle; Vallance, Jessica; Vacher, Corinne, 2018, "DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.", https://doi.org/10.15454/8CVWRR, Portail Data INRAE, V1

This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal community. The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v3 chemistry, 2x250 bp)...

Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor - raw sequencing reads

Jun 25, 2018

Auer, Lucas, 2018, "Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor - raw sequencing reads", https://doi.org/10.15454/E6YRKX, Portail Data INRAE, V1

Raw Illumina MiSeq sequencing reads (paired) for Screening of phytophagous and xylophagous insects guts microbiota abilities to degrade lignocellulose in bioreactor. Names used correspond the publication. 5 insects were used for screening : Beetle, Chafer, Cockroach, Cricket and...

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