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1 to 7 of 7 Results

Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script Jan 5, 2021 Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script", https://doi.org/10.15454/A3QKZI, Portail Data INRAE, V1 See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...
New insights into homoeologous copy number variations in the hexaploid wheat genome Oct 14, 2020 Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome", https://doi.org/10.15454/C3XH6H, Portail Data INRAE, V1 Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...
MINTIA paper Simulated data Aug 31, 2020 Laguerre, Sandrine, 2020, "MINTIA paper Simulated data", https://doi.org/10.15454/TJC6SP, Portail Data INRAE, V1 90 sets of reads associated to the 45 simulated fosmids used in MINTIA paper (extraction of 15 sets of sequence from 3 genomes x 2 sequencing machines)
PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF] Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...
Annotated list of species used in this study Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1 Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...
MINTIA paper Biological samples May 29, 2020 Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1 Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...
Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience Mar 8, 2019 - Multi Criteria Assessment Methods Alaphilippe, Aude; Collet, Catherine, 2019, "Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience", https://doi.org/10.15454/3SI1GB, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF] This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but e...

Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script

Jan 5, 2021

Corso, Massimiliano; Magniette, Marie-Laure; Delannoy, Etienne, 2021, "Untageted metabolomic analyses on seeds of six Camelina sativa varieties cultivated for five consecutive years - R Script", https://doi.org/10.15454/A3QKZI, Portail Data INRAE, V1

See https://doi.org/10.15454/ATTENN, Portail Data INRAE, V1 for a full description of the experiment. Statistical analyses on untargeted metabolomic data Raw data were normalised on the internal standard (Apigenin) and weight of seeds used for the extraction. Normalised metabolit...

New insights into homoeologous copy number variations in the hexaploid wheat genome

Oct 14, 2020

Paux, Etienne, 2020, "New insights into homoeologous copy number variations in the hexaploid wheat genome", https://doi.org/10.15454/C3XH6H, Portail Data INRAE, V1

Bread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been consider...

MINTIA paper Simulated data

Aug 31, 2020

Laguerre, Sandrine, 2020, "MINTIA paper Simulated data", https://doi.org/10.15454/TJC6SP, Portail Data INRAE, V1

90 sets of reads associated to the 45 simulated fosmids used in MINTIA paper (extraction of 15 sets of sequence from 3 genomes x 2 sequencing machines)

PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Pirsicila; Togawa, Roberto, 2020, "PPN-specific candidate effectors expressed in endophytic phases of M. incognita parasitic life cycle", https://doi.org/10.15454/WBZZ5M, Portail Data INRAE, V1, UNF:6:Q6V0cPfaBNCHOg5KABL/1g== [fileUNF]

Annotated list of M. incognita candidate effector proteins that fulfil these criteria: - the proteins are PPN-specific according to orhtofinder and return no significant hit over than in other PPN against the NCBI's nr. - the protein does not belong to a multigene family - the co...

Annotated list of species used in this study

Aug 18, 2020 - Genes specific to phytoparasitic nematodes INRAE/EMBRAPA

Danchin, Etienne; Grynberg, Priscila; Togawa, Roberto, 2020, "Annotated list of species used in this study", https://doi.org/10.15454/IIAQOW, Portail Data INRAE, V1

Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofi...

MINTIA paper Biological samples

May 29, 2020

Laguerre, Sandrine, 2020, "MINTIA paper Biological samples", https://doi.org/10.15454/AH8CRS, Portail Data INRAE, V1

Reads corresponding to the biological samples initially analysed in "Investigating Host Microbiota Relationships Through Functional Metagenomics" of Laville et al and used to validate MINTIA pipeline on biological samples. The assembled and annotated fosmids of Laville et al are...

Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience

Mar 8, 2019 - Multi Criteria Assessment Methods

Alaphilippe, Aude; Collet, Catherine, 2019, "Annotation data about Multi Criteria Assessment Methods used in Plant Health and Environment: the French National Institute for Agricultural Research (INRA-SPE) experience", https://doi.org/10.15454/3SI1GB, Portail Data INRAE, V2, UNF:6:gfLdB4WVXzg8A986MUUPFA== [fileUNF]

This data article contains annotation data characterizing Multi Criteria Assessment Methods proposed in the scientific literature by INRA researchers belonging to the Plant Health and Environment department. Its research aims to contribute to the development of a productive but e...

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