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Type: (datasets) Subject: Plant Health and Pathology Type: (datasets) Author Name: Candresse, Thierry

1 to 8 of 8 Results

Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period Jul 31, 2019 Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period", https://doi.org/10.15454/5BLYMJ, Portail Data INRAE, V1, UNF:6:zHbwy2kRNYfSFnRYG1y0sw== [fileUNF] Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and surrounding weeds/wild plants in horticultural contexts in southwestern France. A total of 165 libraries were p...
Supplementary tables to manuscript: “Crop and wild plants/weed species-associated viromes in a horticultural context: diversity, prevalence and stability over a two-year period” Jul 31, 2019 Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Crop and wild plants/weed species-associated viromes in a horticultural context: diversity, prevalence and stability over a two-year period”", https://doi.org/10.15454/JRB3P4, Portail Data INRAE, V1 Supplementary tables to manuscript in Chapter 1.
Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses” Jul 31, 2019 Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses”", https://doi.org/10.15454/OAKDVI, Portail Data INRAE, V1, UNF:6:UoaxapZDJcV5rZNUqGRuqQ== [fileUNF] Supplementary tables to manuscript in Chapter 2
Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments” Jul 31, 2019 Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments”", https://doi.org/10.15454/UL0OLW, Portail Data INRAE, V1, UNF:6:DnZgs5I2Yfn5qjpU112fKw== [fileUNF] Supplementary tables to manuscript in Chapter 3.
Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum” Jul 31, 2019 Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum”", https://doi.org/10.15454/RWOLLQ, Portail Data INRAE, V1, UNF:6:Mg1hXDjtGpQzxMfjXWjgyg== [fileUNF] Supplementary tables to manuscript in Chapter 4
Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools Jul 25, 2019 Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools", https://doi.org/10.15454/X23KJF, Portail Data INRAE, V1 Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from composite samples of wild herbaceous plants in different ecological contexts. In total, 32 libraries were...
Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum Jul 25, 2019 Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum", https://doi.org/10.15454/S486RR, Portail Data INRAE, V1 We selected tomato (Solanum lycopersicum) and european black nightshade (Solanum nigrum) as a pair of related crop-weed species to study the diversity and potential flow of viral populations using high throughput sequencing (HTS) based metagenomics. A total of 20 libraries were p...
Viral metagenomic data for comparison of two viral sequence enrichment approaches Jul 12, 2019 Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1 This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...

Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period

Jul 31, 2019

Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Viral metagenomic data of crop and wild plant/weed species in horticultural contexts: analysis of viral diversity, prevalence and stability over a two-year period", https://doi.org/10.15454/5BLYMJ, Portail Data INRAE, V1, UNF:6:zHbwy2kRNYfSFnRYG1y0sw== [fileUNF]

Using purified double-stranded RNAs (dsRNAs) and high-throughput sequencing (HTS) on a 454 pyrosequencing platform, we analyzed the metavirome associated with crops and surrounding weeds/wild plants in horticultural contexts in southwestern France. A total of 165 libraries were p...

Supplementary tables to manuscript: “Crop and wild plants/weed species-associated viromes in a horticultural context: diversity, prevalence and stability over a two-year period”

Jul 31, 2019

Ma, Yuxin; Marais, Armelle; Theil, Sebastien; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Bergey, Bernard; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Crop and wild plants/weed species-associated viromes in a horticultural context: diversity, prevalence and stability over a two-year period”", https://doi.org/10.15454/JRB3P4, Portail Data INRAE, V1

Supplementary tables to manuscript in Chapter 1.

Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses”

Jul 31, 2019

Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses”", https://doi.org/10.15454/OAKDVI, Portail Data INRAE, V1, UNF:6:UoaxapZDJcV5rZNUqGRuqQ== [fileUNF]

Supplementary tables to manuscript in Chapter 2

Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments”

Jul 31, 2019

Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Different patterns in leaf-associated viromes and mycobiomes of wild plant populations between cultivated and unmanaged environments”", https://doi.org/10.15454/UL0OLW, Portail Data INRAE, V1, UNF:6:DnZgs5I2Yfn5qjpU112fKw== [fileUNF]

Supplementary tables to manuscript in Chapter 3.

Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum”

Jul 31, 2019

Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Supplementary tables to manuscript: “Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum”", https://doi.org/10.15454/RWOLLQ, Portail Data INRAE, V1, UNF:6:Mg1hXDjtGpQzxMfjXWjgyg== [fileUNF]

Supplementary tables to manuscript in Chapter 4

Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools

Jul 25, 2019

Ma, Yuxin; Fort, Tania; Marais, Armelle; Lefebvre, Marie; Theil, Sebastien; Candresse, Thierry, 2019, "Viral metagenomic and fungal ITS metabarcoding data from complex pools of plant samples from southwestern France and for pools of fungal cultures obtained from these plant pools", https://doi.org/10.15454/X23KJF, Portail Data INRAE, V1

Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from composite samples of wild herbaceous plants in different ecological contexts. In total, 32 libraries were...

Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum

Jul 25, 2019

Ma, Yuxin; Marais, Armelle; Lefebvre, Marie; Faure, Chantal; Candresse, Thierry, 2019, "Metagenomic analysis of virome cross-talk between cultivated Solanum lycopersicum and wild Solanum nigrum", https://doi.org/10.15454/S486RR, Portail Data INRAE, V1

We selected tomato (Solanum lycopersicum) and european black nightshade (Solanum nigrum) as a pair of related crop-weed species to study the diversity and potential flow of viral populations using high throughput sequencing (HTS) based metagenomics. A total of 20 libraries were p...

Viral metagenomic data for comparison of two viral sequence enrichment approaches

Jul 12, 2019

Ma, Yuxin; Marais-Colombel, Armelle; Lefebvre, Marie; Svanella-Dumas, Laurence; Faure, Chantal; Candresse, Thierry, 2019, "Viral metagenomic data for comparison of two viral sequence enrichment approaches", https://doi.org/10.15454/TVWBCQ, Portail Data INRAE, V1

This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for the description of the viromes in various complex plant pools. In total 12 libraries were prepared for...

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